Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004853A_C01 KMC004853A_c01
(400 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175086.1| gr1 protein; protein id: At1g44350.1, supported... 68 2e-12
emb|CAA09330.1| gr1-protein [Arabidopsis thaliana] 68 3e-12
gb|AAL47552.1| IAA-amino acid conjugate hydrolase-like protein [... 68 7e-12
gb|AAL59907.1| IAA-amino acid hydrolase [Arabidopsis thaliana] 67 4e-11
ref|NP_200477.1| IAA-amino acid hydrolase (gb|AAC04866.1); prote... 67 4e-11
>ref|NP_175086.1| gr1 protein; protein id: At1g44350.1, supported by cDNA:
gi_18252192, supported by cDNA: gi_18389265 [Arabidopsis
thaliana] gi|13876501|gb|AAK43477.1|AC084807_2 IAA-amino
acid hydrolase, putative [Arabidopsis thaliana]
gi|18252193|gb|AAL61929.1| IAA-amino acid hydrolase,
putative [Arabidopsis thaliana]
gi|18389266|gb|AAL67076.1| IAA-amino acid hydrolase
[Arabidopsis thaliana] gi|21436395|gb|AAM51367.1|
IAA-amino acid hydrolase [Arabidopsis thaliana]
Length = 464
Score = 68.2 bits (165), Expect(2) = 2e-12
Identities = 31/45 (68%), Positives = 35/45 (76%)
Frame = +3
Query: 264 RPEMAEWLKRLRRRIHSNPELAFEEIETSGLIRKELDLMGVSYRY 398
+P+ WLKR+RR IH NPELAFEE ETS LIR ELD MG+ YRY
Sbjct: 82 QPDNVAWLKRVRRTIHENPELAFEEYETSRLIRSELDRMGIMYRY 126
Score = 23.5 bits (49), Expect(2) = 2e-12
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +2
Query: 212 CEVWSEACSEAVM 250
C VW++ACS+ ++
Sbjct: 65 CRVWTKACSDEIL 77
>emb|CAA09330.1| gr1-protein [Arabidopsis thaliana]
Length = 464
Score = 67.8 bits (164), Expect(2) = 3e-12
Identities = 30/45 (66%), Positives = 35/45 (77%)
Frame = +3
Query: 264 RPEMAEWLKRLRRRIHSNPELAFEEIETSGLIRKELDLMGVSYRY 398
+P+ WLKR+RR IH NPELAFEE ETS L+R ELD MG+ YRY
Sbjct: 82 QPDNVAWLKRVRRTIHENPELAFEEYETSRLVRSELDRMGIMYRY 126
Score = 23.5 bits (49), Expect(2) = 3e-12
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +2
Query: 212 CEVWSEACSEAVM 250
C VW++ACS+ ++
Sbjct: 65 CRVWTKACSDEIL 77
>gb|AAL47552.1| IAA-amino acid conjugate hydrolase-like protein [Arabidopsis
thaliana]
Length = 441
Score = 67.8 bits (164), Expect(2) = 7e-12
Identities = 30/45 (66%), Positives = 35/45 (77%)
Frame = +3
Query: 264 RPEMAEWLKRLRRRIHSNPELAFEEIETSGLIRKELDLMGVSYRY 398
+P+ WLKR+RR IH NPELAFEE ETS L+R ELD MG+ YRY
Sbjct: 59 QPDNVAWLKRVRRTIHENPELAFEEYETSRLVRSELDRMGIMYRY 103
Score = 22.3 bits (46), Expect(2) = 7e-12
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +2
Query: 212 CEVWSEACSEAVM 250
C VW++ACS+ ++
Sbjct: 42 CWVWTKACSDEIL 54
>gb|AAL59907.1| IAA-amino acid hydrolase [Arabidopsis thaliana]
Length = 439
Score = 67.4 bits (163), Expect = 4e-11
Identities = 27/47 (57%), Positives = 39/47 (82%)
Frame = +3
Query: 258 ARRPEMAEWLKRLRRRIHSNPELAFEEIETSGLIRKELDLMGVSYRY 398
A+ PE+ +W+ ++RR+IH NPEL +EE+ETS LIR EL+L+G+ YRY
Sbjct: 42 AKSPEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRY 88
>ref|NP_200477.1| IAA-amino acid hydrolase (gb|AAC04866.1); protein id: At5g56660.1,
supported by cDNA: gi_18175666, supported by cDNA:
gi_902790 [Arabidopsis thaliana]
gi|21264464|sp|P54970|ILL2_ARATH IAA-amino acid
hydrolase homolog 2 precursor gi|2921830|gb|AAC04866.1|
IAA-amino acid hydrolase [Arabidopsis thaliana]
gi|10176770|dbj|BAB09884.1| IAA-amino acid hydrolase
[Arabidopsis thaliana]
Length = 439
Score = 67.4 bits (163), Expect = 4e-11
Identities = 27/47 (57%), Positives = 39/47 (82%)
Frame = +3
Query: 258 ARRPEMAEWLKRLRRRIHSNPELAFEEIETSGLIRKELDLMGVSYRY 398
A+ PE+ +W+ ++RR+IH NPEL +EE+ETS LIR EL+L+G+ YRY
Sbjct: 42 AKSPEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRY 88
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,879,725
Number of Sequences: 1393205
Number of extensions: 11503338
Number of successful extensions: 141974
Number of sequences better than 10.0: 4019
Number of HSP's better than 10.0 without gapping: 69231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114802
length of database: 448,689,247
effective HSP length: 108
effective length of database: 298,223,107
effective search space used: 7157354568
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
