Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004852A_C01 KMC004852A_c01
(446 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189872.1| putative protein; protein id: At3g42860.1, supp... 40 0.005
ref|NP_683614.1| hypothetical protein; protein id: At3g30755.1 [... 37 0.055
ref|NP_683506.1| hypothetical protein; protein id: At1g78355.1 [... 35 0.16
ref|NP_213887.1| alanyl-tRNA synthetase [Aquifex aeolicus] gi|62... 35 0.21
ref|NP_683301.1| hypothetical protein; protein id: At1g12725.1 [... 35 0.27
>ref|NP_189872.1| putative protein; protein id: At3g42860.1, supported by cDNA:
gi_17529083 [Arabidopsis thaliana]
gi|11357560|pir||T47344 hypothetical protein F18P9.20 -
Arabidopsis thaliana gi|7529257|emb|CAB86673.1| putative
protein [Arabidopsis thaliana]
gi|17529084|gb|AAL38752.1| unknown protein [Arabidopsis
thaliana] gi|22136980|gb|AAM91719.1| unknown protein
[Arabidopsis thaliana]
Length = 372
Score = 40.4 bits (93), Expect = 0.005
Identities = 26/79 (32%), Positives = 33/79 (40%), Gaps = 3/79 (3%)
Frame = -1
Query: 431 SGTHKNPGKWFLRCRYWKSAGDCGYFKWIDVDAVGSTSAATPAVPISSTIPTSVSTNGP- 255
S T KNPG+ F +C + G CG+F+W D TS T S++ T P
Sbjct: 108 SNTPKNPGRKFYKCPNREENGGCGFFQWCDAVQSSGTSTTT-----SNSYGNGNDTKFPD 162
Query: 254 --CSCSGIAIDKLTRKIEE 204
C C LT K E
Sbjct: 163 HQCPCGAGLCRVLTAKTGE 181
Score = 32.3 bits (72), Expect = 1.4
Identities = 14/37 (37%), Positives = 23/37 (61%)
Frame = -1
Query: 425 THKNPGKWFLRCRYWKSAGDCGYFKWIDVDAVGSTSA 315
T +N G+ F RC ++ G CG+FKW + + V S ++
Sbjct: 179 TGENVGRQFYRCPVFE--GSCGFFKWCNDNVVSSPTS 213
>ref|NP_683614.1| hypothetical protein; protein id: At3g30755.1 [Arabidopsis
thaliana]
Length = 162
Score = 37.0 bits (84), Expect = 0.055
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Frame = -1
Query: 437 YRSGTHKNPGKWFLRCRYWKSAGDCGYFKWIDVDAVGSTSAATPAVPISSTIPTSVSTNG 258
Y S + KNPG+ + RC K D FKW++ G+ + P ST+ + ++
Sbjct: 35 YTSTSAKNPGRPYFRCHTRK---DDHLFKWVE---DGTYEVVVDSWPKLSTMDSEINA-A 87
Query: 257 PCSCSGIAIDKLTRKIEEAEKKLDEERK----IMKQKNLLLIISWTFNVILFQQLFFKWY 90
CS +T E E + +EERK + LL +SW L+ Q WY
Sbjct: 88 KSGCS--RARSITGDGERTEGRSNEERKGKPEMAIDDQTLLFLSW-----LYYQCHCTWY 140
>ref|NP_683506.1| hypothetical protein; protein id: At1g78355.1 [Arabidopsis
thaliana]
Length = 149
Score = 35.4 bits (80), Expect = 0.16
Identities = 31/116 (26%), Positives = 49/116 (41%), Gaps = 4/116 (3%)
Frame = -1
Query: 437 YRSGTHKNPGKWFLRCRYWKSAGDCGYFKWIDVDAVGSTSAATPAVPISSTIPTSVSTNG 258
+ S T KNPG+ F RC KS D FKW++ A P + S+I + N
Sbjct: 28 FTSSTTKNPGRPFFRC---KSCKDDHLFKWVEECMYEEVVDALPKI---SSIDNEI-INA 80
Query: 257 PCSCSGIAIDKLTRKIEEAEKKLDEERKIMKQKNL----LLIISWTFNVILFQQLF 102
+ + IE E + +R+I + K + L +I W ++ + LF
Sbjct: 81 KAEVAVEIANLKELMIELKEDGMWSKREIQRWKKMTKVCLCVIEWELSLNVMSLLF 136
>ref|NP_213887.1| alanyl-tRNA synthetase [Aquifex aeolicus]
gi|6226165|sp|O67323|SYA_AQUAE Alanyl-tRNA synthetase
(Alanine--tRNA ligase) (AlaRS) gi|7437619|pir||H70411
alanine-tRNA ligase (EC 6.1.1.7) - Aquifex aeolicus
gi|2983727|gb|AAC07289.1| alanyl-tRNA synthetase
[Aquifex aeolicus VF5]
Length = 867
Score = 35.0 bits (79), Expect = 0.21
Identities = 24/82 (29%), Positives = 41/82 (49%), Gaps = 5/82 (6%)
Frame = -1
Query: 377 SAGDCGYFKWIDVDAVGS----TSAATPAVPISSTIPTSVSTNGPCSCSGIAIDKLTRKI 210
+ GD GYFK I +VG+ A T + + + S G+ +++ +KI
Sbjct: 668 ATGDIGYFKIISESSVGAGVRRIVAQTGRWSVETAFKEHQTLKKASSALGVGEEEVIQKI 727
Query: 209 EEAEKKL-DEERKIMKQKNLLL 147
EE ++++ D ER+I + K LL
Sbjct: 728 EELKEEIKDREREIQRLKQELL 749
>ref|NP_683301.1| hypothetical protein; protein id: At1g12725.1 [Arabidopsis
thaliana]
Length = 168
Score = 34.7 bits (78), Expect = 0.27
Identities = 28/97 (28%), Positives = 46/97 (46%), Gaps = 1/97 (1%)
Frame = -1
Query: 437 YRSGTHKNPGKWFLRCRYWKSAGDCGYFKWIDVDAVGSTSAATPAVPISSTIPTSVSTNG 258
Y S + NPG+ F RC + D FKW++ G A+P S+I + +
Sbjct: 35 YTSASKSNPGRPFFRC---PTKQDDHLFKWVE---YGVYEEVVEALPKISSIDSEI-MKA 87
Query: 257 PCSCSGIAIDKLTRKIEEA-EKKLDEERKIMKQKNLL 150
C + I I++L I+E E+ + ER+I K ++
Sbjct: 88 KCEVA-IEIEQLKTMIKEVKEEAMCSEREIKNWKRMI 123
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,720,254
Number of Sequences: 1393205
Number of extensions: 8086527
Number of successful extensions: 27267
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 26103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27243
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
