Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004849A_C01 KMC004849A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179638.1| unknown protein; protein id: At2g20480.1 [Arabi... 37 0.18
ref|NP_496190.2| Regulator of sensory neuron cilium formation an... 34 1.5
ref|NP_496191.2| Regulator of sensory neuron cilium formation an... 34 1.5
ref|XP_288018.1| hypothetical protein XP_288018 [Mus musculus] 32 5.7
ref|NP_465075.1| similar to B. subtilis late competence protein ... 32 7.4
>ref|NP_179638.1| unknown protein; protein id: At2g20480.1 [Arabidopsis thaliana]
gi|25411981|pir||G84589 hypothetical protein At2g20480
[imported] - Arabidopsis thaliana
gi|4586030|gb|AAD25648.1| unknown protein [Arabidopsis
thaliana]
Length = 63
Score = 37.0 bits (84), Expect = 0.18
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -1
Query: 476 ILRSDPIETEEAVLRLPPF 420
ILRSDP+ETEEAVLRLP F
Sbjct: 37 ILRSDPMETEEAVLRLPSF 55
>ref|NP_496190.2| Regulator of sensory neuron cilium formation and dauer formation,
regulatory factor X transcription factor DAF-19 isoform
(90.9 kD) (daf-19) [Caenorhabditis elegans]
gi|13432161|sp|Q09555|DF19_CAEEL RFX-like transcription
factor daf-19 gi|7381608|gb|AAF61564.1|AF226156_1
RFX-like transcription factor DAF-19 [Caenorhabditis
elegans] gi|14530436|emb|CAC42295.1| C. elegans DAF-19
protein (corresponding sequence F33H1.1b)
[Caenorhabditis elegans]
Length = 805
Score = 33.9 bits (76), Expect = 1.5
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +1
Query: 106 ASSEIIYSNLAIIMNLTNCQIV*HTGVHSTQPSISPSAPIAEENLITRKITSLRNGSLGE 285
+SS +++ M+L Q + HT VHS PS AP+ N+++ +T ++G+
Sbjct: 393 SSSSSCRDSVSPCMDLPAQQTIQHTPVHSVIPSTQQPAPLHNNNVVSYVVTESDKAAMGK 452
Query: 286 AHL 294
L
Sbjct: 453 IDL 455
>ref|NP_496191.2| Regulator of sensory neuron cilium formation and dauer formation,
regulatory factor X transcription factor DAF-19 isoform
(88.3 kD) (daf-19) [Caenorhabditis elegans]
gi|7500416|pir||T21708 hypothetical protein F33H1.1 -
Caenorhabditis elegans gi|3876596|emb|CAA88701.1| C.
elegans DAF-19 protein (corresponding sequence F33H1.1a)
[Caenorhabditis elegans]
gi|7542484|gb|AAF63475.1|AF233652_1 RFX-type
transcription factor DAF-19 short variant
[Caenorhabditis elegans]
Length = 780
Score = 33.9 bits (76), Expect = 1.5
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +1
Query: 106 ASSEIIYSNLAIIMNLTNCQIV*HTGVHSTQPSISPSAPIAEENLITRKITSLRNGSLGE 285
+SS +++ M+L Q + HT VHS PS AP+ N+++ +T ++G+
Sbjct: 368 SSSSSCRDSVSPCMDLPAQQTIQHTPVHSVIPSTQQPAPLHNNNVVSYVVTESDKAAMGK 427
Query: 286 AHL 294
L
Sbjct: 428 IDL 430
>ref|XP_288018.1| hypothetical protein XP_288018 [Mus musculus]
Length = 103
Score = 32.0 bits (71), Expect = 5.7
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = -1
Query: 563 TLSLSISRSLFSFYFLLYCYIFFFC 489
+LSLS+S SLF +FL + Y+FF C
Sbjct: 42 SLSLSLSLSLFLSFFLEFLYLFFCC 66
>ref|NP_465075.1| similar to B. subtilis late competence protein ComC (type IV
prepilin peptidase) [Listeria monocytogenes EGD-e]
gi|25516113|pir||AF1268 B. subtilis late competence
protein ComC (type IV prepilin peptidase) homolog comC
[imported] - Listeria monocytogenes (strain EGD-e)
gi|16410979|emb|CAC99628.1| similar to B. subtilis late
competence protein ComC (type IV prepilin peptidase)
[Listeria monocytogenes]
Length = 236
Score = 31.6 bits (70), Expect = 7.4
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = -3
Query: 570 PVHTLTLYL--SLSLQFLLSFVLLYILLLYYVTD 475
P++ L LY+ S S FLL +++ Y L +++TD
Sbjct: 81 PIYILLLYIQFSFSYSFLLYYIIYYFLAFFFITD 114
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,890,624
Number of Sequences: 1393205
Number of extensions: 9149776
Number of successful extensions: 25590
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 24592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25554
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
