Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004846A_C01 KMC004846A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_073120.1| conserved hypothetical protein [Mycoplasma geni... 32 5.6
gb|ZP_00108704.1| hypothetical protein [Nostoc punctiforme] 31 7.3
ref|NP_348094.1| Hypothetical protein [Clostridium acetobutylicu... 31 7.3
>ref|NP_073120.1| conserved hypothetical protein [Mycoplasma genitalium]
gi|1351587|sp|P47688|Y450_MYCGE Hypothetical protein
MG450 gi|1361698|pir||G64249 hypothetical protein MG450
- Mycoplasma genitalium gi|3845043|gb|AAC72470.1|
conserved hypothetical protein [Mycoplasma genitalium]
Length = 237
Score = 31.6 bits (70), Expect = 5.6
Identities = 17/61 (27%), Positives = 29/61 (46%)
Frame = -1
Query: 220 KAFPNNYNLSINISLEKAVDF*FGLHLLHKFWKKKLRRFELSYDVYAMRVAVILIKWFVK 41
K+ N+Y+L I I ++K + + WK + FE + V R+ +LI W +
Sbjct: 25 KSIINDYDLIIGIPIDKEIS------TSYLNWKIVEKEFEDKFHVLDSRIVEVLIAWLIS 78
Query: 40 D 38
D
Sbjct: 79 D 79
>gb|ZP_00108704.1| hypothetical protein [Nostoc punctiforme]
Length = 780
Score = 31.2 bits (69), Expect = 7.3
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 386 SSLQALSKGCKNDDLKNVMSFPS--EVPFPSPSTSAFEPSLLSSSS 517
SS+ L KG KN+DLKN++ F S ++ F S S E L +S
Sbjct: 523 SSIAKLPKGFKNEDLKNILEFESGTKLRFYLVSNSTTEAVLSGKTS 568
>ref|NP_348094.1| Hypothetical protein [Clostridium acetobutylicum]
gi|25500605|pir||G97080 hypothetical protein CAC1466
[imported] - Clostridium acetobutylicum
gi|15024411|gb|AAK79434.1|AE007658_4 Hypothetical
protein [Clostridium acetobutylicum]
Length = 139
Score = 31.2 bits (69), Expect = 7.3
Identities = 22/65 (33%), Positives = 30/65 (45%), Gaps = 6/65 (9%)
Frame = -2
Query: 291 FGNNGATPVHSIKG*HVHGILELLRP------FPTTTTSLLTFH*RKQLIFNLGCIFCIN 130
F N G TP + G H I+E + +T TS L R+ L FN GC +C+
Sbjct: 6 FSNEGNTPFQQLLG-HNKDIMEKWTSLEECFFYSSTFTSELKEEVRRTLAFNNGCQYCMA 64
Query: 129 FGRKS 115
G+ S
Sbjct: 65 KGKPS 69
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,868,376
Number of Sequences: 1393205
Number of extensions: 7926599
Number of successful extensions: 20506
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20490
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
