Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004845A_C01 KMC004845A_c01
(818 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL87250.1| unknown protein [Arabidopsis thaliana] 103 3e-21
gb|AAN13221.1| unknown protein [Arabidopsis thaliana] 103 3e-21
pir||T01714 hypothetical protein A_IG002N01.4 - Arabidopsis thal... 103 3e-21
ref|NP_192038.2| hypothetical protein; protein id: At4g01290.1 [... 103 3e-21
pir||H85016 hypothetical protein AT4g01290 [imported] - Arabidop... 101 1e-20
>gb|AAL87250.1| unknown protein [Arabidopsis thaliana]
Length = 922
Score = 103 bits (257), Expect = 3e-21
Identities = 72/160 (45%), Positives = 91/160 (56%), Gaps = 14/160 (8%)
Frame = -1
Query: 812 PPNPQFPGNTL-RPPFHQS-SSGLTGFDPPAHHSMLQQMHMPGNLPPH-LLRGFPRGPPL 642
PPN +FP N + RPPFH + +SG FD H M+Q+MHM NL H L++GFP P
Sbjct: 771 PPNHRFPPNMIHRPPFHHTPTSGHPEFDRLPPH-MMQKMHMQDNLQHHHLMQGFPGSGPQ 829
Query: 641 P---PHPSNPMNSFMQEPNPMQGFPFNGHQHPTFG--GPGMQLQAPEVAGGRNHPEALQR 477
P PH +N M + E NP QGFPF H+ P +G PG Q+ E HP +LQ
Sbjct: 830 PHHSPHVNNQMPGLIPELNPSQGFPF-AHRQPNYGMPPPGSQVNRGE------HPASLQT 882
Query: 476 LFEMERR---SKSKPI--RASGPG-QGMYGQELDLGFGYR 375
L +++R +K P +A GP QG G ELDLGFGYR
Sbjct: 883 LLGIQQRMDPAKQIPAVGQAGGPNRQGSVGHELDLGFGYR 922
>gb|AAN13221.1| unknown protein [Arabidopsis thaliana]
Length = 856
Score = 103 bits (257), Expect = 3e-21
Identities = 72/160 (45%), Positives = 91/160 (56%), Gaps = 14/160 (8%)
Frame = -1
Query: 812 PPNPQFPGNTL-RPPFHQS-SSGLTGFDPPAHHSMLQQMHMPGNLPPH-LLRGFPRGPPL 642
PPN +FP N + RPPFH + +SG FD H M+Q+MHM NL H L++GFP P
Sbjct: 705 PPNHRFPPNMIHRPPFHHTPTSGHPEFDRLPPH-MMQKMHMQDNLQHHHLMQGFPGSGPQ 763
Query: 641 P---PHPSNPMNSFMQEPNPMQGFPFNGHQHPTFG--GPGMQLQAPEVAGGRNHPEALQR 477
P PH +N M + E NP QGFPF H+ P +G PG Q+ E HP +LQ
Sbjct: 764 PHHSPHVNNQMPGLIPELNPSQGFPF-AHRQPNYGMPPPGSQVNRGE------HPASLQT 816
Query: 476 LFEMERR---SKSKPI--RASGPG-QGMYGQELDLGFGYR 375
L +++R +K P +A GP QG G ELDLGFGYR
Sbjct: 817 LLGIQQRMDPAKQIPAVGQAGGPNRQGSVGHELDLGFGYR 856
>pir||T01714 hypothetical protein A_IG002N01.4 - Arabidopsis thaliana
gi|2191145|gb|AAB61032.1| A_IG002N01.4 gene product
[Arabidopsis thaliana]
Length = 1028
Score = 103 bits (257), Expect = 3e-21
Identities = 72/160 (45%), Positives = 91/160 (56%), Gaps = 14/160 (8%)
Frame = -1
Query: 812 PPNPQFPGNTL-RPPFHQS-SSGLTGFDPPAHHSMLQQMHMPGNLPPH-LLRGFPRGPPL 642
PPN +FP N + RPPFH + +SG FD H M+Q+MHM NL H L++GFP P
Sbjct: 877 PPNHRFPPNMIHRPPFHHTPTSGHPEFDRLPPH-MMQKMHMQDNLQHHHLMQGFPGSGPQ 935
Query: 641 P---PHPSNPMNSFMQEPNPMQGFPFNGHQHPTFG--GPGMQLQAPEVAGGRNHPEALQR 477
P PH +N M + E NP QGFPF H+ P +G PG Q+ E HP +LQ
Sbjct: 936 PHHSPHVNNQMPGLIPELNPSQGFPF-AHRQPNYGMPPPGSQVNRGE------HPASLQT 988
Query: 476 LFEMERR---SKSKPI--RASGPG-QGMYGQELDLGFGYR 375
L +++R +K P +A GP QG G ELDLGFGYR
Sbjct: 989 LLGIQQRMDPAKQIPAVGQAGGPNRQGSVGHELDLGFGYR 1028
>ref|NP_192038.2| hypothetical protein; protein id: At4g01290.1 [Arabidopsis thaliana]
Length = 1083
Score = 103 bits (257), Expect = 3e-21
Identities = 72/160 (45%), Positives = 91/160 (56%), Gaps = 14/160 (8%)
Frame = -1
Query: 812 PPNPQFPGNTL-RPPFHQS-SSGLTGFDPPAHHSMLQQMHMPGNLPPH-LLRGFPRGPPL 642
PPN +FP N + RPPFH + +SG FD H M+Q+MHM NL H L++GFP P
Sbjct: 867 PPNHRFPPNMIHRPPFHHTPTSGHPEFDRLPPH-MMQKMHMQDNLQHHHLMQGFPGSGPQ 925
Query: 641 P---PHPSNPMNSFMQEPNPMQGFPFNGHQHPTFG--GPGMQLQAPEVAGGRNHPEALQR 477
P PH +N M + E NP QGFPF H+ P +G PG Q+ E HP +LQ
Sbjct: 926 PHHSPHVNNQMPGLIPELNPSQGFPF-AHRQPNYGMPPPGSQVNRGE------HPASLQT 978
Query: 476 LFEMERR---SKSKPI--RASGPG-QGMYGQELDLGFGYR 375
L +++R +K P +A GP QG G ELDLGFGYR
Sbjct: 979 LLGIQQRMDPAKQIPAVGQAGGPNRQGSVGHELDLGFGYR 1018
>pir||H85016 hypothetical protein AT4g01290 [imported] - Arabidopsis thaliana
gi|7267626|emb|CAB80938.1| hypothetical protein
[Arabidopsis thaliana]
Length = 736
Score = 101 bits (252), Expect = 1e-20
Identities = 71/159 (44%), Positives = 90/159 (55%), Gaps = 14/159 (8%)
Frame = -1
Query: 812 PPNPQFPGNTL-RPPFHQS-SSGLTGFDPPAHHSMLQQMHMPGNLPPH-LLRGFPRGPPL 642
PPN +FP N + RPPFH + +SG FD H M+Q+MHM NL H L++GFP P
Sbjct: 519 PPNHRFPPNMIHRPPFHHTPTSGHPEFDRLPPH-MMQKMHMQDNLQHHHLMQGFPGSGPQ 577
Query: 641 P---PHPSNPMNSFMQEPNPMQGFPFNGHQHPTFG--GPGMQLQAPEVAGGRNHPEALQR 477
P PH +N M + E NP QGFPF H+ P +G PG Q+ E HP +LQ
Sbjct: 578 PHHSPHVNNQMPGLIPELNPSQGFPF-AHRQPNYGMPPPGSQVNRGE------HPASLQT 630
Query: 476 LFEMERR---SKSKPI--RASGPG-QGMYGQELDLGFGY 378
L +++R +K P +A GP QG G ELDLGFGY
Sbjct: 631 LLGIQQRMDPAKQIPAVGQAGGPNRQGSVGHELDLGFGY 669
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 777,038,503
Number of Sequences: 1393205
Number of extensions: 19708620
Number of successful extensions: 66912
Number of sequences better than 10.0: 499
Number of HSP's better than 10.0 without gapping: 54569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63716
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42296827742
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
