Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004840A_C01 KMC004840A_c01
(650 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_610947.2| CG8547-PA [Drosophila melanogaster] gi|24653600... 34 1.5
ref|NP_615162.1| helicase (SNF2 family) [Methanosarcina acetivor... 32 7.4
gb|AAK92841.1| GH09468p [Drosophila melanogaster] 32 7.4
ref|NP_176368.1| serine/threonine protein kinase, putative; prot... 32 7.4
gb|ZP_00006149.1| hypothetical protein [Rhodobacter sphaeroides] 26 8.3
>ref|NP_610947.2| CG8547-PA [Drosophila melanogaster] gi|24653600|ref|NP_725373.1|
CG8547-PB [Drosophila melanogaster]
gi|21645423|gb|AAF58267.3| CG8547-PA [Drosophila
melanogaster] gi|21645424|gb|AAM70997.1| CG8547-PB
[Drosophila melanogaster]
Length = 579
Score = 34.3 bits (77), Expect = 1.5
Identities = 19/47 (40%), Positives = 26/47 (54%), Gaps = 1/47 (2%)
Frame = +3
Query: 513 GSPASKGLR-GVPTNRAFPQQ*P*NNGQDESHHRYREKRTSPNDTSN 650
G P S L+ G+P N A+PQQ P NG + Y K +S +T+N
Sbjct: 387 GGPHSPPLQPGLPPNNAYPQQPPNGNGYPPNSTTYSYKYSSTTNTNN 433
>ref|NP_615162.1| helicase (SNF2 family) [Methanosarcina acetivorans str. C2A]
gi|19913949|gb|AAM03642.1| helicase (SNF2 family)
[Methanosarcina acetivorans str. C2A]
Length = 1078
Score = 32.0 bits (71), Expect = 7.4
Identities = 15/36 (41%), Positives = 22/36 (60%)
Frame = +2
Query: 434 ELGMAELHKEKRKNSSHLHWESVRSKWITSIKRPQG 541
E+G EL KE RK S ++SV W++++K P G
Sbjct: 230 EIGEKELAKEARKRKS---FDSVHDAWVSALKSPDG 262
>gb|AAK92841.1| GH09468p [Drosophila melanogaster]
Length = 577
Score = 32.0 bits (71), Expect = 7.4
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +3
Query: 513 GSPASKGLRGVPTNRAFPQQ*P*NNGQDESHHRYREKRTSPNDTSN 650
G P S L+ +P N A+PQQ P NG + Y K +S +T+N
Sbjct: 387 GGPHSPPLQ-LPPNNAYPQQPPNGNGYPPNSTTYSYKYSSTTNTNN 431
>ref|NP_176368.1| serine/threonine protein kinase, putative; protein id: At1g61750.1
[Arabidopsis thaliana] gi|25404346|pir||C96643
hypothetical protein T13M11.11 [imported] - Arabidopsis
thaliana gi|4508076|gb|AAD21420.1| 55659
Length = 352
Score = 32.0 bits (71), Expect = 7.4
Identities = 18/77 (23%), Positives = 36/77 (46%)
Frame = +1
Query: 91 YHYNCNPEPEDQ*TFKFLSTLLEYYS*KLKLSNHVPSCHHLFCAPNTSSFKLLFNE*NHF 270
Y N P ++ +FK L+ + + L L H+ +H+F N ++ + +
Sbjct: 265 YGENDTPSSDESFSFK-LAIFIVFLDEHLGLEQHIHVIYHIFFLINIKTYLIYITWIIYL 323
Query: 271 FLEKSINYVFQNMYILN 321
FL +I ++QN + L+
Sbjct: 324 FLLSTIGTIYQNQHFLH 340
>gb|ZP_00006149.1| hypothetical protein [Rhodobacter sphaeroides]
Length = 361
Score = 26.2 bits (56), Expect(2) = 8.3
Identities = 13/40 (32%), Positives = 20/40 (49%)
Frame = -3
Query: 462 SLCNSAMPSSGELSKYG*HRYRVEFCNLLHMQLLRPNSLP 343
++C G L+ RYR+ F N L + LL P ++P
Sbjct: 168 TVCTLVALPVGTLAGIALSRYRLRFANALQVYLLLPFTVP 207
Score = 24.3 bits (51), Expect(2) = 8.3
Identities = 11/40 (27%), Positives = 18/40 (44%)
Frame = -1
Query: 647 RCIIWRCSLFSVPMMGLVLAVILWLLLRKGSICRHPPEAF 528
R IW S+ ++ V+L + G++ PPE F
Sbjct: 103 RLAIWSLVWISILILSAPTVVVLGASVTSGNMIAFPPEGF 142
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 563,337,408
Number of Sequences: 1393205
Number of extensions: 12148436
Number of successful extensions: 34391
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 33328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34383
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
