Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004839A_C01 KMC004839A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189619.1| unknown protein; protein id: At3g29760.1 [Arabi... 85 4e-16
dbj|BAB02526.1| emb|CAB39684.1~gene_id:MOD1.21~similar to unknow... 85 4e-16
ref|NP_194349.1| putative protein; protein id: At4g26190.1 [Arab... 85 4e-16
gb|AAM47581.1| unknown protein [Sorghum bicolor] 82 5e-15
gb|AAM22488.1| 36I5.7 [Oryza sativa (japonica cultivar-group)] 79 2e-14
>ref|NP_189619.1| unknown protein; protein id: At3g29760.1 [Arabidopsis thaliana]
Length = 533
Score = 85.1 bits (209), Expect = 4e-16
Identities = 38/76 (50%), Positives = 56/76 (73%)
Frame = -1
Query: 510 TLLLDDSPYQALLNPPRTSVFPHTYKFENQNDNSLAVEGDMRQYLEGLANADHMQKYVEE 331
T+LLDDSPY+ALLNPP T++FPH+Y +N+ D SL GD+R +LE L A+++Q ++++
Sbjct: 435 TVLLDDSPYKALLNPPYTAIFPHSYNHQNKTDTSLGNGGDLRLHLEKLVEAENVQDFIKK 494
Query: 330 HPLAQASIRESSELLE 283
+P Q +I E SE E
Sbjct: 495 NPFGQEAITEVSESWE 510
>dbj|BAB02526.1| emb|CAB39684.1~gene_id:MOD1.21~similar to unknown protein
[Arabidopsis thaliana]
Length = 559
Score = 85.1 bits (209), Expect = 4e-16
Identities = 38/76 (50%), Positives = 56/76 (73%)
Frame = -1
Query: 510 TLLLDDSPYQALLNPPRTSVFPHTYKFENQNDNSLAVEGDMRQYLEGLANADHMQKYVEE 331
T+LLDDSPY+ALLNPP T++FPH+Y +N+ D SL GD+R +LE L A+++Q ++++
Sbjct: 461 TVLLDDSPYKALLNPPYTAIFPHSYNHQNKTDTSLGNGGDLRLHLEKLVEAENVQDFIKK 520
Query: 330 HPLAQASIRESSELLE 283
+P Q +I E SE E
Sbjct: 521 NPFGQEAITEVSESWE 536
>ref|NP_194349.1| putative protein; protein id: At4g26190.1 [Arabidopsis thaliana]
gi|7485838|pir||T04274 hypothetical protein F20B18.300 -
Arabidopsis thaliana gi|4538948|emb|CAB39684.1| putative
protein [Arabidopsis thaliana] gi|7269470|emb|CAB79474.1|
putative protein [Arabidopsis thaliana]
Length = 1067
Score = 85.1 bits (209), Expect = 4e-16
Identities = 38/76 (50%), Positives = 57/76 (75%)
Frame = -1
Query: 510 TLLLDDSPYQALLNPPRTSVFPHTYKFENQNDNSLAVEGDMRQYLEGLANADHMQKYVEE 331
TLL+DDSP +AL NPP T +FP Y++ N+ D++L EG++R+YLE LA+A+++QK+V E
Sbjct: 982 TLLVDDSPDKALCNPPHTGIFPSPYQYTNRQDSALGPEGELRKYLERLADAENVQKFVAE 1041
Query: 330 HPLAQASIRESSELLE 283
+P Q +I E+ E E
Sbjct: 1042 NPFGQTAITETHESWE 1057
>gb|AAM47581.1| unknown protein [Sorghum bicolor]
Length = 245
Score = 81.6 bits (200), Expect = 5e-15
Identities = 37/71 (52%), Positives = 51/71 (71%)
Frame = -1
Query: 510 TLLLDDSPYQALLNPPRTSVFPHTYKFENQNDNSLAVEGDMRQYLEGLANADHMQKYVEE 331
TLL+DDSPY+AL NPP T++FP +Y + N NDNSL GD+R YL+ LA AD ++++V
Sbjct: 153 TLLVDDSPYKALRNPPYTAIFPRSYSYLNWNDNSLGPGGDLRVYLQNLAAADDVERFVRN 212
Query: 330 HPLAQASIRES 298
+P Q I +S
Sbjct: 213 NPFGQPFITKS 223
>gb|AAM22488.1| 36I5.7 [Oryza sativa (japonica cultivar-group)]
Length = 261
Score = 79.3 bits (194), Expect = 2e-14
Identities = 37/71 (52%), Positives = 48/71 (67%)
Frame = -1
Query: 510 TLLLDDSPYQALLNPPRTSVFPHTYKFENQNDNSLAVEGDMRQYLEGLANADHMQKYVEE 331
TLL+DDSPY+AL NPP T++FP Y + N NDNSL GD+R YLE L A+ ++ YV
Sbjct: 179 TLLVDDSPYKALRNPPYTAIFPQPYSYLNSNDNSLGPGGDLRVYLENLTVAEDVECYVRN 238
Query: 330 HPLAQASIRES 298
+P Q I +S
Sbjct: 239 NPFGQPFITQS 249
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,470,990
Number of Sequences: 1393205
Number of extensions: 8362249
Number of successful extensions: 18876
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18872
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
