Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004836A_C01 KMC004836A_c01
(368 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL10020.1| NADH dehydrogenase subunit 2 [Varanus acanthurus] 32 1.5
gb|AAL10144.1| NADH dehydrogenase subunit 2 [Varanus storri] 32 1.5
gb|AAL10080.1| NADH dehydrogenase subunit 2 [Varanus kingorum] 32 1.5
gb|AAL10023.1| NADH dehydrogenase subunit 2 [Varanus baritji] 32 2.0
ref|XP_284337.1| hypothetical protein XP_284337 [Mus musculus] g... 32 2.6
>gb|AAL10020.1| NADH dehydrogenase subunit 2 [Varanus acanthurus]
Length = 345
Score = 32.3 bits (72), Expect = 1.5
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +1
Query: 49 MHLT*TDTIKNSKHIIKALHAPVSLNIFLFTLFTREDVPEM 171
MHLT + T++N+ HI + H+P+ ++FL +L + +P M
Sbjct: 219 MHLTTSKTLQNAMHI--SSHSPIITSLFLLSLLSLGGLPPM 257
>gb|AAL10144.1| NADH dehydrogenase subunit 2 [Varanus storri]
Length = 345
Score = 32.3 bits (72), Expect = 1.5
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +1
Query: 49 MHLT*TDTIKNSKHIIKALHAPVSLNIFLFTLFTREDVPEM 171
MHLT + T++N+ HI + H+P+ ++FL +L + +P M
Sbjct: 219 MHLTTSKTLQNAMHI--SSHSPIITSLFLLSLLSLGGLPPM 257
>gb|AAL10080.1| NADH dehydrogenase subunit 2 [Varanus kingorum]
Length = 345
Score = 32.3 bits (72), Expect = 1.5
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +1
Query: 49 MHLT*TDTIKNSKHIIKALHAPVSLNIFLFTLFTREDVPEM 171
MH T + T++N+ HI + H+PV+ ++FL +L + +P M
Sbjct: 219 MHFTSSKTLQNTTHI--SSHSPVTTSLFLLSLLSLGGLPPM 257
>gb|AAL10023.1| NADH dehydrogenase subunit 2 [Varanus baritji]
Length = 345
Score = 32.0 bits (71), Expect = 2.0
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +1
Query: 49 MHLT*TDTIKNSKHIIKALHAPVSLNIFLFTLFTREDVPEM 171
MHLT + T++N+ HI + H+P+ ++FL +L + +P M
Sbjct: 219 MHLTISKTLQNAMHI--SHHSPIITSLFLLSLLSLGGLPPM 257
>ref|XP_284337.1| hypothetical protein XP_284337 [Mus musculus]
gi|26351605|dbj|BAC39439.1| unnamed protein product [Mus
musculus]
Length = 105
Score = 31.6 bits (70), Expect = 2.6
Identities = 10/32 (31%), Positives = 17/32 (52%)
Frame = -3
Query: 222 KDILICICACLLTWLGPHFWNIFTSEESEEEN 127
KD +C+C C+ + PH N + E ++N
Sbjct: 69 KDTCVCVCVCVCVCVSPHIMNKKSQERKRKDN 100
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 287,437,224
Number of Sequences: 1393205
Number of extensions: 5420175
Number of successful extensions: 11658
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11648
length of database: 448,689,247
effective HSP length: 98
effective length of database: 312,155,157
effective search space used: 7491723768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
