Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004831A_C01 KMC004831A_c01
(799 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO59488.1| ser-thr protein kinase [Gossypium hirsutum] 83 2e-23
ref|NP_193599.1| leucine-rich repeat transmembrane protein kinas... 70 6e-16
pir||T04856 hypothetical protein F28A21.50 - Arabidopsis thalian... 70 6e-16
dbj|BAB09312.1| receptor protein kinase-like protein [Arabidopsi... 63 1e-13
ref|NP_199396.1| leucine-rich repeat transmembrane protein kinas... 63 1e-13
>gb|AAO59488.1| ser-thr protein kinase [Gossypium hirsutum]
Length = 328
Score = 82.8 bits (203), Expect(3) = 2e-23
Identities = 36/56 (64%), Positives = 46/56 (81%)
Frame = -2
Query: 654 RLPALIKSCVNPDSKQRPTMKEICERLKEITKITPESAVPKLSPLWWAELEISSTE 487
+L ++K+CVNPD K+RPTM+E+ +LKEIT + P+ A PKLSPLWWAELEI STE
Sbjct: 271 KLFEVVKTCVNPDPKERPTMREVAAKLKEITAMGPDGATPKLSPLWWAELEILSTE 326
Score = 45.4 bits (106), Expect(3) = 2e-23
Identities = 20/39 (51%), Positives = 27/39 (68%)
Frame = -1
Query: 766 VGNSSSENWASHYLQGDKPFPEMVDPNLASYQEDQLEQV 650
+ NSS +WAS YL+ D+P EMVDP L +Q D LE++
Sbjct: 234 IDNSSLADWASDYLKRDQPLKEMVDPTLKFFQGDDLEKL 272
Score = 23.5 bits (49), Expect(3) = 2e-23
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = -3
Query: 797 EMVTGRLPYS 768
EM+TGR+PYS
Sbjct: 224 EMITGRIPYS 233
>ref|NP_193599.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At4g18640.1 [Arabidopsis thaliana]
gi|7268658|emb|CAB78866.1| putative protein (fragment)
[Arabidopsis thaliana]
Length = 685
Score = 70.5 bits (171), Expect(2) = 6e-16
Identities = 28/52 (53%), Positives = 41/52 (78%)
Frame = -2
Query: 642 LIKSCVNPDSKQRPTMKEICERLKEITKITPESAVPKLSPLWWAELEISSTE 487
+I+ C+ + +QRP+MK++ E+LK++ ITPE A P+ SPLWWAELEI S+E
Sbjct: 632 VIRECLKTEQRQRPSMKDVAEQLKQVINITPEKATPRSSPLWWAELEILSSE 683
Score = 35.8 bits (81), Expect(2) = 6e-16
Identities = 16/35 (45%), Positives = 25/35 (70%)
Frame = -1
Query: 754 SSENWASHYLQGDKPFPEMVDPNLASYQEDQLEQV 650
S E WAS YL+ D EM+DP+L +++E++LE +
Sbjct: 596 SIEQWASKYLEKDD-LGEMIDPSLKTFKEEELEVI 629
>pir||T04856 hypothetical protein F28A21.50 - Arabidopsis thaliana (fragment)
gi|4539383|emb|CAB37449.1| putative protein (fragment)
[Arabidopsis thaliana]
Length = 662
Score = 70.5 bits (171), Expect(2) = 6e-16
Identities = 28/52 (53%), Positives = 41/52 (78%)
Frame = -2
Query: 642 LIKSCVNPDSKQRPTMKEICERLKEITKITPESAVPKLSPLWWAELEISSTE 487
+I+ C+ + +QRP+MK++ E+LK++ ITPE A P+ SPLWWAELEI S+E
Sbjct: 609 VIRECLKTEQRQRPSMKDVAEQLKQVINITPEKATPRSSPLWWAELEILSSE 660
Score = 35.8 bits (81), Expect(2) = 6e-16
Identities = 16/35 (45%), Positives = 25/35 (70%)
Frame = -1
Query: 754 SSENWASHYLQGDKPFPEMVDPNLASYQEDQLEQV 650
S E WAS YL+ D EM+DP+L +++E++LE +
Sbjct: 573 SIEQWASKYLEKDD-LGEMIDPSLKTFKEEELEVI 606
>dbj|BAB09312.1| receptor protein kinase-like protein [Arabidopsis thaliana]
Length = 692
Score = 63.2 bits (152), Expect(2) = 1e-13
Identities = 27/50 (54%), Positives = 36/50 (72%)
Frame = -2
Query: 636 KSCVNPDSKQRPTMKEICERLKEITKITPESAVPKLSPLWWAELEISSTE 487
+ C+ D QRP MK + ++LKE+ I+ E A P+LSPLWWAELEI S+E
Sbjct: 641 RHCLKLDESQRPKMKYVVQQLKEVINISQEQATPRLSPLWWAELEILSSE 690
Score = 35.0 bits (79), Expect(2) = 1e-13
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -1
Query: 742 WASHYLQGDKPFPEMVDPNLASYQEDQLEQV 650
WAS YL+ D +M+DP L +Y+E++LE +
Sbjct: 607 WASKYLENDN-LRDMIDPTLTTYKEEELEAI 636
>ref|NP_199396.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g45840.1 [Arabidopsis thaliana]
Length = 668
Score = 63.2 bits (152), Expect(2) = 1e-13
Identities = 27/50 (54%), Positives = 36/50 (72%)
Frame = -2
Query: 636 KSCVNPDSKQRPTMKEICERLKEITKITPESAVPKLSPLWWAELEISSTE 487
+ C+ D QRP MK + ++LKE+ I+ E A P+LSPLWWAELEI S+E
Sbjct: 617 RHCLKLDESQRPKMKYVVQQLKEVINISQEQATPRLSPLWWAELEILSSE 666
Score = 35.0 bits (79), Expect(2) = 1e-13
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -1
Query: 742 WASHYLQGDKPFPEMVDPNLASYQEDQLEQV 650
WAS YL+ D +M+DP L +Y+E++LE +
Sbjct: 583 WASKYLENDN-LRDMIDPTLTTYKEEELEAI 612
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 649,154,775
Number of Sequences: 1393205
Number of extensions: 13688830
Number of successful extensions: 43088
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 39646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43071
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40336047648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
