Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004827A_C01 KMC004827A_c01
(471 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191670.1| ribosomal protein S27; protein id: At3g61110.1 ... 127 2e-39
pir||T47903 ribosomal protein S27 - Arabidopsis thaliana (fragme... 125 7e-39
gb|AAM66954.1| ribosomal protein S27 [Arabidopsis thaliana] 125 1e-37
ref|NP_182095.1| putative ribosomal protein S27; protein id: At2... 125 4e-37
ref|NP_199604.1| ribosomal protein S27; protein id: At5g47930.1,... 123 5e-37
>ref|NP_191670.1| ribosomal protein S27; protein id: At3g61110.1 [Arabidopsis
thaliana] gi|11276658|pir||T50532 ribosomal protein S27
- Arabidopsis thaliana gi|4193382|gb|AAD10029.1|
ribosomal protein S27 [Arabidopsis thaliana]
gi|4193384|gb|AAD10030.1| ribosomal protein S27
[Arabidopsis thaliana] gi|8388627|emb|CAB94147.1|
ribosomal protein S27 [Arabidopsis thaliana]
gi|15724226|gb|AAL06506.1|AF412053_1
AT3g61110/T27I15_200 [Arabidopsis thaliana]
gi|19699108|gb|AAL90920.1| AT3g61110/T27I15_200
[Arabidopsis thaliana]
Length = 86
Score = 127 bits (318), Expect(2) = 2e-39
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = -2
Query: 428 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 249
MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
Score = 56.6 bits (135), Expect(2) = 2e-39
Identities = 22/26 (84%), Positives = 26/26 (99%)
Frame = -3
Query: 247 CQTVLCQPTGGRARLTEGCSFRKKGD 170
CQT+LCQPTGG+A+LTEGCSFR+KGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86
>pir||T47903 ribosomal protein S27 - Arabidopsis thaliana (fragment)
gi|6850878|emb|CAB71041.1| ribosomal protein S27
[Arabidopsis thaliana]
Length = 85
Score = 125 bits (313), Expect(2) = 7e-39
Identities = 59/59 (100%), Positives = 59/59 (100%)
Frame = -2
Query: 425 VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 249
VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1 VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 59
Score = 56.6 bits (135), Expect(2) = 7e-39
Identities = 22/26 (84%), Positives = 26/26 (99%)
Frame = -3
Query: 247 CQTVLCQPTGGRARLTEGCSFRKKGD 170
CQT+LCQPTGG+A+LTEGCSFR+KGD
Sbjct: 60 CQTILCQPTGGKAKLTEGCSFRRKGD 85
>gb|AAM66954.1| ribosomal protein S27 [Arabidopsis thaliana]
Length = 84
Score = 125 bits (313), Expect(2) = 1e-37
Identities = 59/60 (98%), Positives = 60/60 (99%)
Frame = -2
Query: 428 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 249
MVLQNDIDLL+PPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1 MVLQNDIDLLHPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
Score = 52.4 bits (124), Expect(2) = 1e-37
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = -3
Query: 247 CQTVLCQPTGGRARLTEGCSFRKK 176
CQTVLCQPTGG+ARL EGCSFRKK
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84
>ref|NP_182095.1| putative ribosomal protein S27; protein id: At2g45710.1, supported
by cDNA: 18662., supported by cDNA: gi_18252882
[Arabidopsis thaliana] gi|7440568|pir||T02476 40S
ribosomal protein S27 [imported] - Arabidopsis thaliana
gi|3386624|gb|AAC28554.1| putative ribosomal protein S27
[Arabidopsis thaliana] gi|18252883|gb|AAL62368.1|
putative ribosomal protein S27 [Arabidopsis thaliana]
gi|20197050|gb|AAM14895.1| putative ribosomal protein
S27 [Arabidopsis thaliana] gi|21553959|gb|AAM63040.1|
putative ribosomal protein S27 [Arabidopsis thaliana]
gi|23197762|gb|AAN15408.1| putative ribosomal protein
S27 [Arabidopsis thaliana]
Length = 84
Score = 125 bits (315), Expect(2) = 4e-37
Identities = 59/60 (98%), Positives = 60/60 (99%)
Frame = -2
Query: 428 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 249
MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGN
Sbjct: 1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60
Score = 50.1 bits (118), Expect(2) = 4e-37
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = -3
Query: 247 CQTVLCQPTGGRARLTEGCSFRKK 176
CQT+LC PTGG+A+LTEGCSFRKK
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84
>ref|NP_199604.1| ribosomal protein S27; protein id: At5g47930.1, supported by cDNA:
8698., supported by cDNA: gi_15028164, supported by
cDNA: gi_19310838 [Arabidopsis thaliana]
gi|9758519|dbj|BAB09045.1| ribosomal protein S27
[Arabidopsis thaliana] gi|15028165|gb|AAK76706.1|
putative ribosomal protein S27 [Arabidopsis thaliana]
gi|19310839|gb|AAL85150.1| putative ribosomal protein
S27 [Arabidopsis thaliana]
Length = 84
Score = 123 bits (308), Expect(2) = 5e-37
Identities = 58/60 (96%), Positives = 59/60 (97%)
Frame = -2
Query: 428 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 249
MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1 MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
Score = 52.4 bits (124), Expect(2) = 5e-37
Identities = 22/24 (91%), Positives = 23/24 (95%)
Frame = -3
Query: 247 CQTVLCQPTGGRARLTEGCSFRKK 176
CQTVLCQPTGG+ARL EGCSFRKK
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,625,061
Number of Sequences: 1393205
Number of extensions: 8464979
Number of successful extensions: 20108
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 19413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20106
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
