Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004825A_C01 KMC004825A_c01
(658 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_701462.1| hypothetical protein [Plasmodium falciparum 3D7... 33 3.3
dbj|BAA19926.1| PEThy; ZPT4-2 [Petunia x hybrida] 32 9.7
>ref|NP_701462.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496629|gb|AAN36186.1|AE014845_41 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 214
Score = 33.1 bits (74), Expect = 3.3
Identities = 18/48 (37%), Positives = 25/48 (51%), Gaps = 4/48 (8%)
Frame = -1
Query: 634 EESHKGENEKNHMWXLEEINISAWLSER----DEKEKRHKRV*ENYYV 503
EE+ K N K H W L E N+S W+ E D++EK+ NY +
Sbjct: 2 EENKKIMNMKEHQWRLFEYNMSKWMIENKYILDQEEKKKFYKCANYSI 49
>dbj|BAA19926.1| PEThy; ZPT4-2 [Petunia x hybrida]
Length = 554
Score = 31.6 bits (70), Expect = 9.7
Identities = 17/63 (26%), Positives = 28/63 (43%)
Frame = -1
Query: 604 NHMWXLEEINISAWLSERDEKEKRHKRV*ENYYVLNIKGLNFSIFKVTLYGRCANTDERG 425
N+ W ++ W E EK+ +NY + K L+ +K YG ++ D+R
Sbjct: 306 NYQWNTSNTSLGCWFDESGPAEKKELTRMKNYVTDSRKDLS-KDYKYDSYGMVSHLDKRE 364
Query: 424 ERK 416
RK
Sbjct: 365 SRK 367
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,171,320
Number of Sequences: 1393205
Number of extensions: 11276584
Number of successful extensions: 30106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30088
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
