Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004822A_C01 KMC004822A_c01
(630 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566889.1| FtsH protease, putative; protein id: At3g47060.... 54 1e-06
ref|NP_568892.1| FtsH protease, putative; protein id: At5g58870.... 47 2e-04
gb|ZP_00098702.1| hypothetical protein [Desulfitobacterium hafni... 33 3.1
ref|NP_510529.1| Phosphatidylinositol 3-kinase like [Caenorhabdi... 32 5.3
>ref|NP_566889.1| FtsH protease, putative; protein id: At3g47060.1, supported by
cDNA: gi_20466541 [Arabidopsis thaliana]
gi|11357297|pir||T45642 FtsH metalloproteinase-like
protein - Arabidopsis thaliana
gi|6522587|emb|CAB61952.1| FtsH metalloprotease-like
protein [Arabidopsis thaliana]
gi|20466542|gb|AAM20588.1| FtsH metalloprotease-like
protein [Arabidopsis thaliana]
gi|23198320|gb|AAN15687.1| FtsH metalloprotease-like
protein [Arabidopsis thaliana]
Length = 802
Score = 54.3 bits (129), Expect = 1e-06
Identities = 26/36 (72%), Positives = 28/36 (77%)
Frame = -1
Query: 630 EGEELHKWLRMVVAPTELAIFVKGTQESLLPLQIGS 523
EGEEL KWL MVVAP ELA+FV+G QE LLP Q S
Sbjct: 766 EGEELQKWLSMVVAPEELAVFVEGKQELLLPAQASS 801
>ref|NP_568892.1| FtsH protease, putative; protein id: At5g58870.1, supported by
cDNA: gi_16648972 [Arabidopsis thaliana]
gi|9759220|dbj|BAB09632.1| cell division protein FtsH
[Arabidopsis thaliana] gi|16648973|gb|AAL24338.1| cell
division protein FtsH [Arabidopsis thaliana]
Length = 806
Score = 47.4 bits (111), Expect = 2e-04
Identities = 22/36 (61%), Positives = 25/36 (69%)
Frame = -1
Query: 630 EGEELHKWLRMVVAPTELAIFVKGTQESLLPLQIGS 523
EGEEL KWL VV ELA+F+KG Q +LLP Q S
Sbjct: 770 EGEELQKWLNRVVPSEELAVFIKGKQTALLPAQASS 805
>gb|ZP_00098702.1| hypothetical protein [Desulfitobacterium hafniense]
Length = 654
Score = 33.1 bits (74), Expect = 3.1
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = -2
Query: 329 VL*LNSLDQSHTEMERCRDIYIDAHSRISLVLPVPPLLNY-YTCVALLVTEFVLY 168
VL LN LD++ +R + + ++ + VL VPPL Y Y CV + +TE V+Y
Sbjct: 293 VLFLNQLDKTFIP-KRMYQMLLGMYALFAAVLLVPPLKVYAYLCVPIGITELVIY 346
>ref|NP_510529.1| Phosphatidylinositol 3-kinase like [Caenorhabditis elegans]
gi|7500831|pir||T21982 hypothetical protein F39B1.1 -
Caenorhabditis elegans gi|3876891|emb|CAA93489.1|
Hypothetical protein F39B1.1 [Caenorhabditis elegans]
gi|3877199|emb|CAA93776.1| Hypothetical protein F39B1.1
[Caenorhabditis elegans]
Length = 1607
Score = 32.3 bits (72), Expect = 5.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 482 CDLEYEF*HNMLKPHDPSSYITDSMSSPLQLCIFL 378
CDL Y F H++L+ + +YI +S+ P Q I+L
Sbjct: 1444 CDLVYTFFHSILRDNKCDTYIDESLDMPSQCQIYL 1478
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,213,752
Number of Sequences: 1393205
Number of extensions: 11463826
Number of successful extensions: 22781
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22766
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
