Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004818A_C01 KMC004818A_c01
(467 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_151795.1| hypothetical protein XP_151795 [Mus musculus] 33 1.9
ref|NP_610672.1| CG13209-PA [Drosophila melanogaster] gi|2162747... 31 5.6
ref|NP_177296.1| disease resistance protein family (LRR); protei... 30 9.5
>ref|XP_151795.1| hypothetical protein XP_151795 [Mus musculus]
Length = 125
Score = 32.7 bits (73), Expect = 1.9
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -3
Query: 393 SSIALQMLIYCNEGNMDAEIGE*WEGSLILTLQAKV 286
S+ Q+L YCNEG D GE E +LI LQ +
Sbjct: 52 STEVFQLLSYCNEGQQDVNNGEPDESNLITNLQEAI 87
>ref|NP_610672.1| CG13209-PA [Drosophila melanogaster] gi|21627475|gb|AAF58666.2|
CG13209-PA [Drosophila melanogaster]
Length = 1626
Score = 31.2 bits (69), Expect = 5.6
Identities = 16/45 (35%), Positives = 29/45 (63%), Gaps = 3/45 (6%)
Frame = +1
Query: 100 EGKSGNVGAKLPELKQKMQNLVIFLNIVCQDITYTY---SHLEGE 225
EG+S + +L+QKMQ +I +++VC+D+T +H++GE
Sbjct: 254 EGRSFLLWLGEADLRQKMQGRLIVVHLVCRDMTVALNASNHVKGE 298
>ref|NP_177296.1| disease resistance protein family (LRR); protein id: At1g71400.1
[Arabidopsis thaliana]
gi|12323740|gb|AAG51836.1|AC016163_25 putative disease
resistance protein; 66165-63625 [Arabidopsis thaliana]
Length = 846
Score = 30.4 bits (67), Expect = 9.5
Identities = 14/29 (48%), Positives = 16/29 (54%)
Frame = -1
Query: 176 FRNITRFCIFCFSSGNFAPTFPDLPSCMH 90
F N+T+ IF SS NF TFP S H
Sbjct: 273 FANLTKLSIFVLSSNNFTSTFPFDMSIFH 301
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,667,152
Number of Sequences: 1393205
Number of extensions: 7901733
Number of successful extensions: 17092
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17091
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
