Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004817A_C01 KMC004817A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO81005.1| citrate carrier protein, CCS family [Enterococcus... 33 3.4
gb|AAB18291.1| L-malate permease [Streptococcus bovis] 33 3.4
ref|NP_664574.1| putative L-malate permease [Streptococcus pyoge... 32 7.6
ref|NP_269265.1| putative L-malate permease [Streptococcus pyoge... 32 7.6
ref|NP_607195.1| putative L-malate permease [Streptococcus pyoge... 32 7.6
>gb|AAO81005.1| citrate carrier protein, CCS family [Enterococcus faecalis V583]
Length = 441
Score = 32.7 bits (73), Expect = 3.4
Identities = 15/46 (32%), Positives = 32/46 (68%), Gaps = 1/46 (2%)
Frame = -2
Query: 461 MIPKLNVFY-LLSVSIIDLSNAEIVVKRAPILFFFSSAKFCGSLWG 327
++P + VF+ LL+ +++D + +I++K+A L+F+ + CGS+ G
Sbjct: 88 LVPSIMVFFNLLNQNVLD--STDILMKQANFLYFYIACLVCGSILG 131
>gb|AAB18291.1| L-malate permease [Streptococcus bovis]
Length = 441
Score = 32.7 bits (73), Expect = 3.4
Identities = 15/46 (32%), Positives = 32/46 (68%), Gaps = 1/46 (2%)
Frame = -2
Query: 461 MIPKLNVFY-LLSVSIIDLSNAEIVVKRAPILFFFSSAKFCGSLWG 327
++P + VF+ LL+ +++D + +I++K+A L+F+ + CGS+ G
Sbjct: 88 LVPSIMVFFNLLNQNVLD--STDILMKQANFLYFYIACLVCGSILG 131
>ref|NP_664574.1| putative L-malate permease [Streptococcus pyogenes MGAS315]
gi|28895882|ref|NP_802232.1| putative L-malate permease
[Streptococcus pyogenes SSI-1]
gi|21904502|gb|AAM79377.1| putative L-malate permease
[Streptococcus pyogenes MGAS315]
gi|28811132|dbj|BAC64065.1| putative L-malate permease
[Streptococcus pyogenes SSI-1]
Length = 443
Score = 31.6 bits (70), Expect = 7.6
Identities = 14/46 (30%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = -2
Query: 461 MIPKLNVFY-LLSVSIIDLSNAEIVVKRAPILFFFSSAKFCGSLWG 327
++P + VF+ LL+ ++++ +N +++K+A L+F+ + CGS+ G
Sbjct: 89 LVPSILVFFNLLNPNVLEATN--VLMKQANFLYFYIACLVCGSILG 132
>ref|NP_269265.1| putative L-malate permease [Streptococcus pyogenes]
gi|13622248|gb|AAK33986.1| putative L-malate permease
[Streptococcus pyogenes M1 GAS]
Length = 443
Score = 31.6 bits (70), Expect = 7.6
Identities = 14/46 (30%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = -2
Query: 461 MIPKLNVFY-LLSVSIIDLSNAEIVVKRAPILFFFSSAKFCGSLWG 327
++P + VF+ LL+ ++++ +N +++K+A L+F+ + CGS+ G
Sbjct: 89 LVPSILVFFNLLNPNVLEATN--VLMKQANFLYFYIACLVCGSILG 132
>ref|NP_607195.1| putative L-malate permease [Streptococcus pyogenes MGAS8232]
gi|19748229|gb|AAL97694.1| putative L-malate permease
[Streptococcus pyogenes MGAS8232]
Length = 443
Score = 31.6 bits (70), Expect = 7.6
Identities = 14/46 (30%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = -2
Query: 461 MIPKLNVFY-LLSVSIIDLSNAEIVVKRAPILFFFSSAKFCGSLWG 327
++P + VF+ LL+ ++++ +N +++K+A L+F+ + CGS+ G
Sbjct: 89 LVPSILVFFNLLNPNVLEATN--VLMKQANFLYFYIACLVCGSILG 132
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,045,270
Number of Sequences: 1393205
Number of extensions: 9678872
Number of successful extensions: 18384
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18383
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
