Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004814A_C01 KMC004814A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00099339.1| hypothetical protein [Desulfitobacterium hafni... 32 4.4
ref|XP_287981.1| hypothetical protein XP_287981 [Mus musculus] 32 5.7
emb|CAC87274.1| LppS protein [Mycoplasma conjunctivae] 31 9.7
gb|EAA15357.1| hypothetical protein [Plasmodium yoelii yoelii] 31 9.7
>gb|ZP_00099339.1| hypothetical protein [Desulfitobacterium hafniense]
Length = 488
Score = 32.3 bits (72), Expect = 4.4
Identities = 16/49 (32%), Positives = 32/49 (64%)
Frame = +2
Query: 347 PAILRINSNSMLLPVQGLLIAVDVVPECEEGFLMLGYMVLSSEKMVLGL 493
PA++ +NS S+LL + GL++ V ++ +G +++G +V + + LGL
Sbjct: 197 PALVTLNSPSVLLAILGLVLTVILLIRNVKGAILIGIIVTTLVGIPLGL 245
>ref|XP_287981.1| hypothetical protein XP_287981 [Mus musculus]
Length = 100
Score = 32.0 bits (71), Expect = 5.7
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = -2
Query: 266 GYSEFIYDDTKSILF**CMSSMTCHLNFFLSFNL*YSTKYLYFCTAIALIFFLIL 102
G+S+ YD + F S++ L+FFLSF L + YL+FC I FF +L
Sbjct: 22 GFSKTFYDSF-FLPFFSLSISLSLSLSFFLSFFLEFL--YLFFCCLILFFFFAVL 73
>emb|CAC87274.1| LppS protein [Mycoplasma conjunctivae]
Length = 1405
Score = 31.2 bits (69), Expect = 9.7
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -2
Query: 488 PGPSSQMTGPYNPASGIPPHIQEPHQQQSEVPEQVAAWNSS*FLGLLVLFLIK 330
PGPS+ T P PA+ P Q+P QQ S+ Q + F G+ V L++
Sbjct: 1354 PGPSAPAT-PVPPATPPQPQPQQPSQQPSQPQSQQQGQKGNPFGGIFVPELVR 1405
>gb|EAA15357.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 847
Score = 31.2 bits (69), Expect = 9.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 494 TAPGPSSQMTGPYNPASGIPPHIQEPHQQQSEVPEQV 384
T P PS+ T P P++ + Q PH QQ + P+QV
Sbjct: 382 TTPSPSTATTTPIIPSTEVSS--QHPHHQQPKPPQQV 416
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,555,218
Number of Sequences: 1393205
Number of extensions: 9705635
Number of successful extensions: 22249
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22222
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
