Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004812A_C01 KMC004812A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176185.1| DEAD/DEAH box RNA helicase (HUA ENHANCER2), put... 128 4e-29
gb|AAH14669.1|AAH14669 Unknown (protein for IMAGE:4849317) [Homo... 99 4e-20
sp|P42285|K052_HUMAN Protein KIAA0052 gi|6633995|dbj|BAA06124.2|... 99 4e-20
ref|NP_082427.1| RIKEN cDNA 2610528A15 [Mus musculus] gi|1284872... 99 4e-20
ref|XP_215490.1| similar to Protein KIAA0052 [Rattus norvegicus] 99 4e-20
>ref|NP_176185.1| DEAD/DEAH box RNA helicase (HUA ENHANCER2), putative; protein id:
At1g59760.1 [Arabidopsis thaliana]
gi|25307593|pir||E96621 hypothetical protein F23H11.8
[imported] - Arabidopsis thaliana
gi|5080810|gb|AAD39319.1|AC007258_8 Very similar to
helicases [Arabidopsis thaliana]
Length = 988
Score = 128 bits (322), Expect = 4e-29
Identities = 66/73 (90%), Positives = 69/73 (94%)
Frame = -2
Query: 571 VYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIEAAKSIGETQLETKFEEAVSK 392
VYAWAKGSKFYE+MEI +VFEGSLIRAIRR+EEVLQQLI AAKSIGETQLE K EEAVSK
Sbjct: 916 VYAWAKGSKFYEVMEIARVFEGSLIRAIRRMEEVLQQLIVAAKSIGETQLEAKLEEAVSK 975
Query: 391 IKRDIVFAASLYL 353
IKRDIVFAASLYL
Sbjct: 976 IKRDIVFAASLYL 988
>gb|AAH14669.1|AAH14669 Unknown (protein for IMAGE:4849317) [Homo sapiens]
Length = 715
Score = 99.0 bits (245), Expect = 4e-20
Identities = 47/73 (64%), Positives = 60/73 (81%)
Frame = -2
Query: 571 VYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIEAAKSIGETQLETKFEEAVSK 392
VY WA G+ F I ++T VFEGS+IR +RRLEE+L+Q+ +AAK+IG T+LE KF E ++K
Sbjct: 643 VYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITK 702
Query: 391 IKRDIVFAASLYL 353
IKRDIVFAASLYL
Sbjct: 703 IKRDIVFAASLYL 715
>sp|P42285|K052_HUMAN Protein KIAA0052 gi|6633995|dbj|BAA06124.2| KIAA0052 protein [Homo
sapiens]
Length = 1046
Score = 99.0 bits (245), Expect = 4e-20
Identities = 47/73 (64%), Positives = 60/73 (81%)
Frame = -2
Query: 571 VYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIEAAKSIGETQLETKFEEAVSK 392
VY WA G+ F I ++T VFEGS+IR +RRLEE+L+Q+ +AAK+IG T+LE KF E ++K
Sbjct: 974 VYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITK 1033
Query: 391 IKRDIVFAASLYL 353
IKRDIVFAASLYL
Sbjct: 1034 IKRDIVFAASLYL 1046
>ref|NP_082427.1| RIKEN cDNA 2610528A15 [Mus musculus] gi|12848729|dbj|BAB28066.1|
unnamed protein product [Mus musculus]
gi|20809985|gb|AAH29230.1| RIKEN cDNA 2610528A15 gene
[Mus musculus]
Length = 1040
Score = 99.0 bits (245), Expect = 4e-20
Identities = 47/73 (64%), Positives = 60/73 (81%)
Frame = -2
Query: 571 VYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIEAAKSIGETQLETKFEEAVSK 392
VY WA G+ F I ++T VFEGS+IR +RRLEE+L+Q+ +AAK+IG T+LE KF E ++K
Sbjct: 968 VYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITK 1027
Query: 391 IKRDIVFAASLYL 353
IKRDIVFAASLYL
Sbjct: 1028 IKRDIVFAASLYL 1040
>ref|XP_215490.1| similar to Protein KIAA0052 [Rattus norvegicus]
Length = 122
Score = 99.0 bits (245), Expect = 4e-20
Identities = 47/73 (64%), Positives = 60/73 (81%)
Frame = -2
Query: 571 VYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIEAAKSIGETQLETKFEEAVSK 392
VY WA G+ F I ++T VFEGS+IR +RRLEE+L+Q+ +AAK+IG T+LE KF E ++K
Sbjct: 50 VYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITK 109
Query: 391 IKRDIVFAASLYL 353
IKRDIVFAASLYL
Sbjct: 110 IKRDIVFAASLYL 122
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,507,002
Number of Sequences: 1393205
Number of extensions: 9466766
Number of successful extensions: 22967
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 22343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22961
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
