Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004808A_C01 KMC004808A_c01
(440 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565128.1| expressed protein; protein id: At1g76200.1, sup... 85 2e-16
dbj|BAB88326.1| BLE1 protein [Oryza sativa] 74 4e-13
ref|NP_701712.1| hypothetical protein [Plasmodium falciparum 3D7... 32 1.4
gb|AAN46104.1| chitin synthase 2 [Trametes versicolor] 32 2.3
gb|AAK29011.1| long-wavelength rhodopsin [Ceratina calcarata] 31 4.0
>ref|NP_565128.1| expressed protein; protein id: At1g76200.1, supported by cDNA:
20257. [Arabidopsis thaliana] gi|21554093|gb|AAM63174.1|
unknown [Arabidopsis thaliana]
Length = 69
Score = 85.1 bits (209), Expect = 2e-16
Identities = 31/37 (83%), Positives = 36/37 (96%)
Frame = -2
Query: 439 GLCAVMWFWVLYKAKQNGPVVLGWRHPWEGHGDHGDG 329
GLCAVMWFW+LY+AKQ+GPVV+GWRHPW+GHGDHG G
Sbjct: 30 GLCAVMWFWILYRAKQDGPVVMGWRHPWDGHGDHGHG 66
>dbj|BAB88326.1| BLE1 protein [Oryza sativa]
Length = 81
Score = 73.9 bits (180), Expect = 4e-13
Identities = 28/38 (73%), Positives = 32/38 (83%)
Frame = -2
Query: 439 GLCAVMWFWVLYKAKQNGPVVLGWRHPWEGHGDHGDGH 326
GLCAVMWFWV Y+AKQ+G V+LG RHPW+GH DH GH
Sbjct: 30 GLCAVMWFWVFYRAKQDGAVLLGMRHPWDGHDDHSHGH 67
>ref|NP_701712.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496884|gb|AAN36436.1|AE014850_1 hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1438
Score = 32.3 bits (72), Expect = 1.4
Identities = 15/35 (42%), Positives = 19/35 (53%)
Frame = -3
Query: 144 VKLDKKVYGCLDKSIDITGRHMGLYSMCVCQL*II 40
+K K V C D + +T H GLYS+ CQ II
Sbjct: 1285 IKKSKNVIYCSDDMVHLTTSHKGLYSIVTCQKRII 1319
>gb|AAN46104.1| chitin synthase 2 [Trametes versicolor]
Length = 189
Score = 31.6 bits (70), Expect = 2.3
Identities = 15/47 (31%), Positives = 28/47 (58%)
Frame = +2
Query: 203 YRQFIEWNKINNI*LTAHSLAQTLKVFLLPSLQLMPN*RRLMPIAMI 343
Y++ + NK+N +TAH T ++ + PS++L R +MP+ +I
Sbjct: 61 YQEGVAKNKVNGKPVTAHIYEYTTQISVTPSMKLEGAERGIMPVQII 107
>gb|AAK29011.1| long-wavelength rhodopsin [Ceratina calcarata]
Length = 128
Score = 30.8 bits (68), Expect = 4.0
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 209 ACKKNFFLHDFMSISYVSTPSL-LNWIKRFMVVW 111
AC ++F DF+S+SY+ SL + +I F+++W
Sbjct: 43 ACGTDYFSKDFLSVSYIVLYSLWVYFIPLFLIIW 76
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,757,752
Number of Sequences: 1393205
Number of extensions: 8443612
Number of successful extensions: 15792
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 15458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15788
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
