Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004805A_C01 KMC004805A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566029.1| F-box protein family, AtFBX5; protein id: At2g4... 121 7e-27
ref|NP_191594.1| Armadillo repeat containing F-box protein; prot... 117 8e-26
ref|NP_787974.1| CG33196-PB [Drosophila melanogaster] gi|2838026... 37 0.18
gb|EAA06779.1| ebiP1657 [Anopheles gambiae str. PEST] 33 3.3
ref|NP_572563.2| CG12139-PB [Drosophila melanogaster] gi|7291057... 33 3.3
>ref|NP_566029.1| F-box protein family, AtFBX5; protein id: At2g44900.1 [Arabidopsis
thaliana] gi|7486948|pir||T00403 hypothetical protein
At2g44900 [imported] - Arabidopsis thaliana
gi|2344894|gb|AAC31834.1| F-box protein family, AtFBX5
[Arabidopsis thaliana]
Length = 930
Score = 121 bits (303), Expect = 7e-27
Identities = 59/79 (74%), Positives = 65/79 (81%)
Frame = -2
Query: 571 GRFVTMLRNPSPILKSCAAFALLQFTIPGGRHAGHHASLMQNAGAARVLRGAAAAATAPL 392
GRFVTMLRNP LK+CAAFALLQFTIPGGRHA HH SLMQN G +R LR AAA+A P
Sbjct: 849 GRFVTMLRNPDSTLKACAAFALLQFTIPGGRHAMHHVSLMQNGGESRFLRSAAASAKTPR 908
Query: 391 EAKIFARIVLRNLEYHQIE 335
EAKIF +I+LRNLE+HQ E
Sbjct: 909 EAKIFTKILLRNLEHHQAE 927
>ref|NP_191594.1| Armadillo repeat containing F-box protein; protein id: At3g60350.1
[Arabidopsis thaliana] gi|11357176|pir||T47846 Arm repeat
containing protein-like - Arabidopsis thaliana
gi|7287983|emb|CAB81821.1| Arm repeat containing
protein-like [Arabidopsis thaliana]
Length = 928
Score = 117 bits (294), Expect = 8e-26
Identities = 60/79 (75%), Positives = 66/79 (82%)
Frame = -2
Query: 571 GRFVTMLRNPSPILKSCAAFALLQFTIPGGRHAGHHASLMQNAGAARVLRGAAAAATAPL 392
GRFVTMLRNP +L++CAAFALLQFTIP RHA HHASLMQNAG AR LR AAAAA+ P
Sbjct: 838 GRFVTMLRNPCLVLRACAAFALLQFTIPESRHAMHHASLMQNAGEARGLRSAAAAASMPR 897
Query: 391 EAKIFARIVLRNLEYHQIE 335
EAKIF +IVLRNLE+ Q E
Sbjct: 898 EAKIFMKIVLRNLEHQQAE 916
>ref|NP_787974.1| CG33196-PB [Drosophila melanogaster]
gi|28380266|gb|AAN10358.2|AE003576_45 CG33196-PB
[Drosophila melanogaster]
Length = 23054
Score = 37.0 bits (84), Expect = 0.18
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Frame = -1
Query: 470 APC*PHAECRCSKSSAWCSRCSDCAT*SENLRQNCSSQS*VSPDRTYKVDHCI--CPSQT 297
+PC P++ CR ++A CS D N R C+ S P + HCI CP
Sbjct: 16513 SPCGPNSRCRVFNNNAVCSCIEDFIGTPPNCRPECTHNSDCLPRLACQRQHCIDPCPGTC 16572
Query: 296 SFFKTFWTCDISHIHSCQRCQKHRMWPLM 210
F ++H C KH P +
Sbjct: 16573 GFNALCHV--VNHAPICSCPPKHNGNPFL 16599
Score = 33.9 bits (76), Expect = 1.5
Identities = 21/73 (28%), Positives = 29/73 (38%), Gaps = 1/73 (1%)
Frame = -1
Query: 521 CSICSSPVHNPWWTTCW-APC*PHAECRCSKSSAWCSRCSDCAT*SENLRQNCSSQS*VS 345
C+ P N + C PC P+++CR S A CS + R C+ S S
Sbjct: 13606 CNRLPEPPQNEYVNPCQPTPCGPNSQCRVSNEQAVCSCLPLFVGTPPSCRPECTISSECS 13665
Query: 344 PDRTYKVDHCICP 306
DR C+ P
Sbjct: 13666 ADRACVNQKCVDP 13678
Score = 33.1 bits (74), Expect = 2.5
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = -1
Query: 521 CSICSSPVHNPWWTTCW-APC*PHAECRCSKSSAWCSRCSDCAT*SENLRQNCSSQS*VS 345
CS P+ + + C +PC P++ CR A CS S+ N R C+S S +
Sbjct: 15537 CSQPPEPIVHEYVNPCQPSPCGPNSNCREVNEQAVCSCRSEFEGAPPNCRPQCTSSSECA 15596
Query: 344 PDRTYKVDHCICP 306
+R C+ P
Sbjct: 15597 SNRACINQKCVDP 15609
Score = 31.2 bits (69), Expect = 9.7
Identities = 21/78 (26%), Positives = 31/78 (38%), Gaps = 2/78 (2%)
Frame = -1
Query: 470 APC*PHAECRCSKSSAWCSRCSDCAT*SENLRQNCSSQS*VSPDRTYKVDHCI--CPSQT 297
+PC +AECR A CS + + R CS+ SP + C+ CP
Sbjct: 15875 SPCGSYAECREQNGQAVCSCLPNYFGVPPSCRPECSTNYDCSPSLACQNQRCVDPCPGAC 15934
Query: 296 SFFKTFWTCDISHIHSCQ 243
+ T + S SC+
Sbjct: 15935 GAYAECRTVNHSPFCSCR 15952
>gb|EAA06779.1| ebiP1657 [Anopheles gambiae str. PEST]
Length = 284
Score = 32.7 bits (73), Expect = 3.3
Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Frame = +2
Query: 401 SRCSGCTTQNSCCT-----CILHEASMVPSMSSTRDCELEKSKCC 520
S CS CTT SCCT C +S S SST C CC
Sbjct: 137 SSCSSCTTSCSCCTSSCSSCASSCSSCASSSSSTTSC-----SCC 176
>ref|NP_572563.2| CG12139-PB [Drosophila melanogaster] gi|7291057|gb|AAF46494.1|
CG12139-PB [Drosophila melanogaster]
Length = 4547
Score = 32.7 bits (73), Expect = 3.3
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = -1
Query: 482 TTCWAPC*PHAECRCSKSSAWCSRCSDCAT*SENLRQNCSSQS*VSPDRTYKVDHCIC-P 306
TT W C + RC +C DC S+ L +NC +P+ +K + C P
Sbjct: 3606 TTGWQRCPGQSNYRCIPKWLFCDGKDDCRDNSDELPENCPK---CNPETDFKCGNNRCIP 3662
Query: 305 SQTSFFKTFWTCDIS 261
Q W CD +
Sbjct: 3663 KQ-------WMCDFA 3670
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,363,691
Number of Sequences: 1393205
Number of extensions: 11131078
Number of successful extensions: 30808
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 29230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30734
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
