Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004803A_C01 KMC004803A_c01
(628 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175444.2| hypothetical protein; protein id: At1g50260.1, ... 83 3e-15
ref|NP_188617.1| unknown protein; protein id: At3g19830.1 [Arabi... 82 4e-15
pir||H96538 hypothetical protein F14I3.13 [imported] - Arabidops... 75 5e-13
dbj|BAB01297.1| gene_id:MPN9.7~unknown protein [Arabidopsis thal... 75 5e-13
gb|EAA37092.1| GLP_227_3811_2789 [Giardia lamblia ATCC 50803] 36 0.36
>ref|NP_175444.2| hypothetical protein; protein id: At1g50260.1, supported by cDNA:
gi_20466317 [Arabidopsis thaliana]
gi|20466318|gb|AAM20476.1| unknown protein [Arabidopsis
thaliana]
Length = 675
Score = 83.2 bits (204), Expect = 3e-15
Identities = 47/105 (44%), Positives = 69/105 (64%), Gaps = 9/105 (8%)
Frame = -2
Query: 624 DKESFMDVLAALIVSEEFQGIVASEAGFTKAVDNGSNIGSKL--------SNVSNSPVVN 469
D+ESFM+VL+ALIVSEEFQGIV+SEA +D G ++G+ + + N+ V N
Sbjct: 572 DQESFMNVLSALIVSEEFQGIVSSEAR-DGIIDGGDSLGAPVPSKPDTSKGSERNADVSN 630
Query: 468 AEPIPSSSDNSKGS-GGSALIWLAVITGIALLIAVNIGGSNLFNP 337
+ + ++S G GG AL+W +ITGI +L+A+N+ GS+ FNP
Sbjct: 631 LDLLVANSGRGAGGDGGLALLWFGIITGILVLVAINMEGSSFFNP 675
>ref|NP_188617.1| unknown protein; protein id: At3g19830.1 [Arabidopsis thaliana]
Length = 666
Score = 82.4 bits (202), Expect = 4e-15
Identities = 47/107 (43%), Positives = 66/107 (60%), Gaps = 12/107 (11%)
Frame = -2
Query: 621 KESFMDVLAALIVSEEFQGIVASEAGFTKAVDNGSNIG-----------SKLSNVSNSPV 475
+ESFM+VL+ALI+SEEFQGIV+SE G K D S++ S+ + N V
Sbjct: 560 QESFMNVLSALILSEEFQGIVSSETGNNKVDDGESSVSPVPSMSGADSESRPKDAGNGDV 619
Query: 474 VNAEPIPSSSD-NSKGSGGSALIWLAVITGIALLIAVNIGGSNLFNP 337
+ E + SD S +GG AL+W VIT + +L+A+N+GGS+ FNP
Sbjct: 620 SDLEVKNAKSDRGSINNGGLALLWFGVITSVLVLVAINMGGSSFFNP 666
>pir||H96538 hypothetical protein F14I3.13 [imported] - Arabidopsis thaliana
gi|5734777|gb|AAD50042.1|AC007980_7 Hypothetical protein
[Arabidopsis thaliana]
Length = 737
Score = 75.5 bits (184), Expect = 5e-13
Identities = 44/100 (44%), Positives = 65/100 (65%), Gaps = 9/100 (9%)
Frame = -2
Query: 624 DKESFMDVLAALIVSEEFQGIVASEAGFTKAVDNGSNIGSKL--------SNVSNSPVVN 469
D+ESFM+VL+ALIVSEEFQGIV+SEA +D G ++G+ + + N+ V N
Sbjct: 564 DQESFMNVLSALIVSEEFQGIVSSEAR-DGIIDGGDSLGAPVPSKPDTSKGSERNADVSN 622
Query: 468 AE-PIPSSSDNSKGSGGSALIWLAVITGIALLIAVNIGGS 352
+ + +S + G GG AL+W +ITGI +L+A+N+ GS
Sbjct: 623 LDLLVANSGRGAGGDGGLALLWFGIITGILVLVAINMEGS 662
>dbj|BAB01297.1| gene_id:MPN9.7~unknown protein [Arabidopsis thaliana]
Length = 683
Score = 75.5 bits (184), Expect = 5e-13
Identities = 47/113 (41%), Positives = 68/113 (59%), Gaps = 12/113 (10%)
Frame = -2
Query: 621 KESFMDVLAALIVSEEFQGIVASEAGFTKAVDNGSNIG-----------SKLSNVSNSPV 475
+ESFM+VL+ALI+SEEFQGIV+SE G K D S++ S+ + N V
Sbjct: 560 QESFMNVLSALILSEEFQGIVSSETGNNKVDDGESSVSPVPSMSGADSESRPKDAGNGDV 619
Query: 474 VNAEPIPSSSD-NSKGSGGSALIWLAVITGIALLIAVNIGGSNLFNP*HGILL 319
+ E + SD S +GG AL+W VIT + +L+A+N+GGS+ + GI+L
Sbjct: 620 SDLEVKNAKSDRGSINNGGLALLWFGVITSVLVLVAINMGGSSESSIQCGIVL 672
>gb|EAA37092.1| GLP_227_3811_2789 [Giardia lamblia ATCC 50803]
Length = 340
Score = 36.2 bits (82), Expect = 0.36
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = +2
Query: 263 RKIILIKTYSKTCQPKIICSRIPCYGLKRFEPPMLTAISNAMPVITASHIKADPPEPLEL 442
R+++ Y K C + + PC+ R EP + A++ + IT + P PL L
Sbjct: 249 RQVVKSCNYDKKCGDCAL--QCPCFVKGRTEPAHINAVAEVLAAITTHPFENCSPNPLSL 306
Query: 443 SELEGIGSAFTTGEFDTLESLDPIFEP 523
SE + T L +L+ + P
Sbjct: 307 SEKTSVVRRITAENSRRLFNLEDVVTP 333
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,216,514
Number of Sequences: 1393205
Number of extensions: 11867592
Number of successful extensions: 31502
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 30407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31475
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
