Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004800A_C01 KMC004800A_c01
(625 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187459.1| unknown protein; protein id: At3g08020.1 [Arabi... 193 1e-48
ref|NP_190778.1| putative protein; protein id: At3g52100.1 [Arab... 125 4e-28
pir||I50463 protein kinase - chicken gi|571460|gb|AAA67037.1| pr... 46 5e-04
gb|AAH08829.1|AAH08829 Similar to short stature homeobox 2 [Homo... 36 5e-04
sp|O60902|SHX2_HUMAN Short stature homeobox protein 2 (Paired-re... 36 5e-04
>ref|NP_187459.1| unknown protein; protein id: At3g08020.1 [Arabidopsis thaliana]
gi|6648214|gb|AAF21212.1|AC013483_36 unknown protein
[Arabidopsis thaliana]
Length = 764
Score = 193 bits (491), Expect = 1e-48
Identities = 104/192 (54%), Positives = 124/192 (64%), Gaps = 13/192 (6%)
Frame = +3
Query: 87 MAFHLACPITCRRICFCSLGFPRSLPDANA---FLNDVALLTDFISAGTTANDAT--ATV 251
MAFH+ACPITCRRIC CSLGF R L ANA FL +V + +F+ +++ TV
Sbjct: 1 MAFHVACPITCRRICHCSLGFSRDLRGANAKHKFLKEVIRVEEFLKDPAVSSNVFIGGTV 60
Query: 252 QVAVPKVVPPPPEALPVAGGDA--------LDESASMKAKRVALQRKGAAAMIAAEEYAR 407
QV VPKVVP P + GD L E AS + KRVALQR+ A + AAE+YAR
Sbjct: 61 QVRVPKVVPAPQTVSILGVGDGAIGSGVDELAEEASAQKKRVALQRQAAVTVEAAEDYAR 120
Query: 408 RFESGDVLDTPGSVTGEELGQSNVKVFCRMCNRVENEGSERAKKMLSCKSCSKKYHRTCL 587
RFESG T GEELG S + + CRMC E EGS+RA++MLSCK C KKYH+ CL
Sbjct: 121 RFESGVNDLTSNDHAGEELGHSGMNIMCRMCFLGEGEGSDRARRMLSCKDCGKKYHKNCL 180
Query: 588 KSWAQNRDLFHW 623
KSWAQ+RDLFHW
Sbjct: 181 KSWAQHRDLFHW 192
>ref|NP_190778.1| putative protein; protein id: At3g52100.1 [Arabidopsis thaliana]
gi|11289967|pir||T49089 hypothetical protein F4F15.210 -
Arabidopsis thaliana gi|4678939|emb|CAB41330.1| putative
protein [Arabidopsis thaliana]
Length = 763
Score = 125 bits (314), Expect = 4e-28
Identities = 78/188 (41%), Positives = 102/188 (53%), Gaps = 9/188 (4%)
Frame = +3
Query: 87 MAFHLACPITCRRICFCSLGFPRSLPD---ANAFLNDVALLTDFISAGTTAN-DATATVQ 254
MAFH+ACPITCR+ICFC LGF R+L + +L ++ L +F+ A TVQ
Sbjct: 1 MAFHVACPITCRKICFCVLGFSRNLHGNEVKDVYLKEIHSLQEFVRNPWDAEVSKDGTVQ 60
Query: 255 VAVPKVVP----PPPEALPVA-GGDALDESASMKAKRVALQRKGAAAMIAAEEYARRFES 419
+ VPK+ P A V G D+ E + + V +R A E YA S
Sbjct: 61 IHVPKLAVFDTGPRIAARNVGVGSDSAMEVVAASSNLVPAKRTLVLQKKAVEVYAANDCS 120
Query: 420 GDVLDTPGSVTGEELGQSNVKVFCRMCNRVENEGSERAKKMLSCKSCSKKYHRTCLKSWA 599
GD+ + + E+ + + C MC VE SERAK MLSCK C KKYHR C+KSWA
Sbjct: 121 GDLEVSVKDLNEEDHDHHSASITCHMCYLVEVGKSERAK-MLSCKCCGKKYHRNCVKSWA 179
Query: 600 QNRDLFHW 623
Q+RDLF+W
Sbjct: 180 QHRDLFNW 187
>pir||I50463 protein kinase - chicken gi|571460|gb|AAA67037.1| protein kinase
[Gallus gallus]
Length = 772
Score = 45.8 bits (107), Expect = 5e-04
Identities = 33/103 (32%), Positives = 47/103 (45%)
Frame = -2
Query: 426 HRRTQSGERTPQRRS*RRRPYAGARRAWPSWRRIHQARHHQQRGELQAVAAQPWGQRPGR 247
H R + ER +RR R ARR W +R AR H +R + + +R R
Sbjct: 120 HARVKEKEREHERRKRHREEQDKARREWERQKRREMAREHSRRERDRLEQLERERERKIR 179
Query: 246 WRWHHWRWFRRK*SR*AKRRR*EKHSRREESAETLTNRSRFGD 118
+ R + + R A+ RR E+ +RRE SA T R +GD
Sbjct: 180 EQQKEQREQKER-ERRAEERRKEREARREVSAHHRTVREEYGD 221
>gb|AAH08829.1|AAH08829 Similar to short stature homeobox 2 [Homo sapiens]
Length = 355
Score = 35.8 bits (81), Expect(2) = 5e-04
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -3
Query: 248 GGGGIIGGGSGGNEVGEQSDVVEKSIRVGKRARKP 144
GGGG+ GGG+GG G +S V E + +R+R+P
Sbjct: 74 GGGGVGGGGAGGGAGGGRSPVRELDMGAAERSREP 108
Score = 29.3 bits (64), Expect(2) = 5e-04
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 412 KRRAYSSAAIIAAAPLRWSATRLAFMEADSSSASPPATGRASGGGG 275
K+ A + ++ + PLR + EA S PA A GGGG
Sbjct: 19 KKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAGGGGG 64
>sp|O60902|SHX2_HUMAN Short stature homeobox protein 2 (Paired-related homeobox protein
SHOT) (Homeobox protein Og12X)
Length = 331
Score = 35.8 bits (81), Expect(2) = 5e-04
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = -3
Query: 248 GGGGIIGGGSGGNEVGEQSDVVEKSIRVGKRARKP 144
GGGG+ GGG+GG G +S V E + +R+R+P
Sbjct: 74 GGGGVGGGGAGGGAGGGRSPVRELDMGAAERSREP 108
Score = 29.3 bits (64), Expect(2) = 5e-04
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 412 KRRAYSSAAIIAAAPLRWSATRLAFMEADSSSASPPATGRASGGGG 275
K+ A + ++ + PLR + EA S PA A GGGG
Sbjct: 19 KKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAGGGGG 64
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 584,936,322
Number of Sequences: 1393205
Number of extensions: 14898212
Number of successful extensions: 160216
Number of sequences better than 10.0: 791
Number of HSP's better than 10.0 without gapping: 88007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135769
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
