Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004799A_C01 KMC004799A_c01
(395 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B96660 protein F2K11.18 [imported] - Arabidopsis thaliana g... 128 2e-29
ref|NP_176533.1| ATP dependent copper transporter, putative; pro... 128 2e-29
gb|AAL02122.1| copper-transporting P-type ATPase [Brassica napus] 116 8e-26
ref|NP_199292.1| ATP dependent copper transporter; protein id: A... 116 8e-26
gb|AAK56262.1|AF367273_1 AT5g44790/K23L20_14 [Arabidopsis thaliana] 116 8e-26
>pir||B96660 protein F2K11.18 [imported] - Arabidopsis thaliana
gi|6633848|gb|AAF19707.1|AC008047_14 F2K11.18
[Arabidopsis thaliana]
Length = 1191
Score = 128 bits (322), Expect = 2e-29
Identities = 62/88 (70%), Positives = 76/88 (85%)
Frame = -1
Query: 395 LVKSSLADVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFTGIRLPPWLAGA 216
L+KS+L DVITAIDLSRKT SRIRLNY+WALGYN++G+PIAAGVL+P T RLPPW+AGA
Sbjct: 910 LMKSNLEDVITAIDLSRKTFSRIRLNYVWALGYNLMGIPIAAGVLFPGTRFRLPPWIAGA 969
Query: 215 CMAASSLSVVSSSLLLQFYKKPLHVESM 132
MAASS+SVV SLLL+ YK+P ++ +
Sbjct: 970 AMAASSVSVVCCSLLLKNYKRPKKLDHL 997
>ref|NP_176533.1| ATP dependent copper transporter, putative; protein id: At1g63440.1
[Arabidopsis thaliana] gi|12229670|sp|Q9SH30|AHM7_ARATH
Potential copper-transporting ATPase 3
Length = 995
Score = 128 bits (322), Expect = 2e-29
Identities = 62/88 (70%), Positives = 76/88 (85%)
Frame = -1
Query: 395 LVKSSLADVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFTGIRLPPWLAGA 216
L+KS+L DVITAIDLSRKT SRIRLNY+WALGYN++G+PIAAGVL+P T RLPPW+AGA
Sbjct: 898 LMKSNLEDVITAIDLSRKTFSRIRLNYVWALGYNLMGIPIAAGVLFPGTRFRLPPWIAGA 957
Query: 215 CMAASSLSVVSSSLLLQFYKKPLHVESM 132
MAASS+SVV SLLL+ YK+P ++ +
Sbjct: 958 AMAASSVSVVCCSLLLKNYKRPKKLDHL 985
>gb|AAL02122.1| copper-transporting P-type ATPase [Brassica napus]
Length = 999
Score = 116 bits (290), Expect = 8e-26
Identities = 54/82 (65%), Positives = 71/82 (85%)
Frame = -1
Query: 395 LVKSSLADVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFTGIRLPPWLAGA 216
L++++L DVITAIDLSRKT++RIRLNY++A+ YN++ +PIAAGV +P ++LPPW AGA
Sbjct: 907 LMRNNLEDVITAIDLSRKTLTRIRLNYVFAMAYNVVSIPIAAGVFFPVLRVQLPPWAAGA 966
Query: 215 CMAASSLSVVSSSLLLQFYKKP 150
CMA SS+SVV SSLLL+ YKKP
Sbjct: 967 CMALSSVSVVCSSLLLRRYKKP 988
>ref|NP_199292.1| ATP dependent copper transporter; protein id: At5g44790.1, supported
by cDNA: gi_14194134, supported by cDNA: gi_4760369
[Arabidopsis thaliana] gi|12229667|sp|Q9S7J8|AHM5_ARATH
Copper-transporting ATPase RAN1 (Responsive-to-antagonist
1) gi|4760370|gb|AAD29109.1|AF082565_1 ATP dependent
copper transporter [Arabidopsis thaliana]
gi|4760380|gb|AAD29115.1| ATP dependent copper
transporter [Arabidopsis thaliana]
gi|6850337|gb|AAC79141.2| ATP dependent copper
transporter (RAN1) [Arabidopsis thaliana]
gi|9758383|dbj|BAB08832.1| ATP dependent copper
transporter [Arabidopsis thaliana]
Length = 1001
Score = 116 bits (290), Expect = 8e-26
Identities = 54/82 (65%), Positives = 71/82 (85%)
Frame = -1
Query: 395 LVKSSLADVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFTGIRLPPWLAGA 216
L++++L DVITAIDLSRKT++RIRLNY++A+ YN++ +PIAAGV +P ++LPPW AGA
Sbjct: 909 LMRNNLEDVITAIDLSRKTLTRIRLNYVFAMAYNVVSIPIAAGVFFPVLRVQLPPWAAGA 968
Query: 215 CMAASSLSVVSSSLLLQFYKKP 150
CMA SS+SVV SSLLL+ YKKP
Sbjct: 969 CMALSSVSVVCSSLLLRRYKKP 990
>gb|AAK56262.1|AF367273_1 AT5g44790/K23L20_14 [Arabidopsis thaliana]
Length = 1001
Score = 116 bits (290), Expect = 8e-26
Identities = 54/82 (65%), Positives = 71/82 (85%)
Frame = -1
Query: 395 LVKSSLADVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFTGIRLPPWLAGA 216
L++++L DVITAIDLSRKT++RIRLNY++A+ YN++ +PIAAGV +P ++LPPW AGA
Sbjct: 909 LMRNNLEDVITAIDLSRKTLTRIRLNYVFAMAYNVVSIPIAAGVFFPVLRVQLPPWAAGA 968
Query: 215 CMAASSLSVVSSSLLLQFYKKP 150
CMA SS+SVV SSLLL+ YKKP
Sbjct: 969 CMALSSVSVVCSSLLLRRYKKP 990
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 344,886,652
Number of Sequences: 1393205
Number of extensions: 7054358
Number of successful extensions: 17929
Number of sequences better than 10.0: 312
Number of HSP's better than 10.0 without gapping: 17558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17824
length of database: 448,689,247
effective HSP length: 107
effective length of database: 299,616,312
effective search space used: 7190791488
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
