Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004798A_C02 KMC004798A_c02
(782 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO52224.1| hypothetical protein [Dictyostelium discoideum] 33 4.7
ref|NP_301362.1| putative phosphoglucomutase/phosphomannomutase ... 32 7.9
>gb|AAO52224.1| hypothetical protein [Dictyostelium discoideum]
Length = 1389
Score = 33.1 bits (74), Expect = 4.7
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +2
Query: 563 NNMEHTYFTSLAHSSMLSVMHPL*DELYHKKRYCLISPKGRYCLISPNNLIIFLSSSNTT 742
NN HTYFTS+ + + LS + + K+ I G I P+++ F+S S+
Sbjct: 1150 NNDNHTYFTSIKNKNDLSKRTNITVSIKMYKQLTTIQFAGENITIQPSSIKYFISLSDYQ 1209
Query: 743 FHQN 754
F N
Sbjct: 1210 FKSN 1213
>ref|NP_301362.1| putative phosphoglucomutase/phosphomannomutase [Mycobacterium
leprae] gi|2145958|pir||S72992 probable phosphorylating
protein ureD - Mycobacterium leprae
gi|467124|gb|AAA17306.1| ureD; B229_C3_234
[Mycobacterium leprae] gi|13092647|emb|CAC29874.1|
putative phosphoglucomutase/phosphomannomutase
[Mycobacterium leprae]
Length = 463
Score = 32.3 bits (72), Expect = 7.9
Identities = 22/64 (34%), Positives = 32/64 (49%), Gaps = 4/64 (6%)
Frame = -1
Query: 191 DTLRLKAFKTRCLVGLW----SDMGLLISWAYQPNVNMGHATHGPGGPKLNL*ISDTTQA 24
D LR+ T + L +D G++IS ++ P V+ G GPGG KL+ DT
Sbjct: 72 DALRVGVLPTPAVAYLTGAYDADFGVMISASHNPMVDNGIKIFGPGGHKLD---DDTEDQ 128
Query: 23 VGDL 12
+ DL
Sbjct: 129 IEDL 132
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 657,960,656
Number of Sequences: 1393205
Number of extensions: 13973448
Number of successful extensions: 23978
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23970
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38935490438
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
