Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004797A_C01 KMC004797A_c01
(718 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567015.1| spliceosomal - like protein; protein id: At3g55... 237 1e-61
gb|EAA11859.1| agCP6257 [Anopheles gambiae str. PEST] 163 2e-39
gb|AAH47171.1| Similar to splicing factor 3b, subunit 3, 130kDa ... 160 1e-38
ref|XP_214697.1| similar to splicing factor 3b, subunit 3, 130kD... 160 2e-38
sp|Q15393|S3B3_HUMAN Splicing factor 3B subunit 3 (Spliceosome a... 160 2e-38
>ref|NP_567015.1| spliceosomal - like protein; protein id: At3g55200.1 [Arabidopsis
thaliana] gi|18410226|ref|NP_567016.1| spliceosomal -
like protein; protein id: At3g55220.1 [Arabidopsis
thaliana] gi|11358854|pir||T47659 spliceosomal-like
protein - Arabidopsis thaliana gi|7019653|emb|CAB75754.1|
spliceosomal-like protein [Arabidopsis thaliana]
gi|7019655|emb|CAB75756.1| spliceosomal-like protein
[Arabidopsis thaliana]
Length = 1214
Score = 237 bits (604), Expect = 1e-61
Identities = 112/124 (90%), Positives = 120/124 (96%)
Frame = -2
Query: 717 VQFNVGDVVTSLQKASLIPGGGECIVYGTIMGSIGALHAFTSRDDVDFFSHLEMHLRQDY 538
VQF+VGDVVT LQKAS+IPGG E I+YGT+MGSIGALHAFTSRDDVDFFSHLEMH+RQ+Y
Sbjct: 1091 VQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEY 1150
Query: 537 PPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILRKLEEVR 358
PPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEIL+KLE+ R
Sbjct: 1151 PPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDAR 1210
Query: 357 NKII 346
NKII
Sbjct: 1211 NKII 1214
>gb|EAA11859.1| agCP6257 [Anopheles gambiae str. PEST]
Length = 1217
Score = 163 bits (413), Expect = 2e-39
Identities = 71/120 (59%), Positives = 98/120 (81%)
Frame = -2
Query: 711 FNVGDVVTSLQKASLIPGGGECIVYGTIMGSIGALHAFTSRDDVDFFSHLEMHLRQDYPP 532
F++G++V SLQKA+LIPGG E ++Y T+ G++GAL FTSR+D DFF HLEMH+R + PP
Sbjct: 1095 FHLGEIVMSLQKATLIPGGSESLIYATMSGTVGALVPFTSREDYDFFQHLEMHMRNENPP 1154
Query: 531 LCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILRKLEEVRNK 352
LCGRDH++YRS Y+PVK+V+DGDLCEQF +L Q+ IA +L RTP+E+ +KLE++R +
Sbjct: 1155 LCGRDHLSYRSYYYPVKNVMDGDLCEQFTSLDPAKQKSIASDLGRTPSEVAKKLEDIRTR 1214
>gb|AAH47171.1| Similar to splicing factor 3b, subunit 3, 130kDa [Danio rerio]
Length = 1217
Score = 160 bits (406), Expect = 1e-38
Identities = 69/122 (56%), Positives = 96/122 (78%)
Frame = -2
Query: 717 VQFNVGDVVTSLQKASLIPGGGECIVYGTIMGSIGALHAFTSRDDVDFFSHLEMHLRQDY 538
+ +++G+ V SLQK +LIPGG E +VY T+ G IG L FTS +D DFF HLEMH+R ++
Sbjct: 1093 INYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHLEMHMRSEF 1152
Query: 537 PPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILRKLEEVR 358
PPLCGRDH+++RS YFPVK+VIDGDLCEQF ++ Q+ +++ELDRTP E+ +KLE++R
Sbjct: 1153 PPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVSEELDRTPPEVSKKLEDIR 1212
Query: 357 NK 352
+
Sbjct: 1213 TR 1214
>ref|XP_214697.1| similar to splicing factor 3b, subunit 3, 130kDa;
spliceosome-associated protein 130; splicing factor 3b,
subunit 3, 130kD [Homo sapiens] [Rattus norvegicus]
Length = 125
Score = 160 bits (405), Expect = 2e-38
Identities = 70/122 (57%), Positives = 97/122 (79%)
Frame = -2
Query: 717 VQFNVGDVVTSLQKASLIPGGGECIVYGTIMGSIGALHAFTSRDDVDFFSHLEMHLRQDY 538
+ ++VG+ V SLQK +LIPGG E +VY T+ G IG L FTS +D DFF H+EMHLR ++
Sbjct: 1 MNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEH 60
Query: 537 PPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILRKLEEVR 358
PPLCGRDH+++RS YFPVK+VIDGDLCEQF ++ + Q+ +++ELDRTP E+ +KLE++R
Sbjct: 61 PPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIR 120
Query: 357 NK 352
+
Sbjct: 121 TR 122
>sp|Q15393|S3B3_HUMAN Splicing factor 3B subunit 3 (Spliceosome associated protein 130)
(SAP 130) (SF3b130) (Pre-mRNA splicing factor SF3b 130
kDa subunit) gi|6006515|emb|CAB56791.1| spliceosomal
protein SAP 130 [Homo sapiens]
Length = 1217
Score = 160 bits (405), Expect = 2e-38
Identities = 70/122 (57%), Positives = 97/122 (79%)
Frame = -2
Query: 717 VQFNVGDVVTSLQKASLIPGGGECIVYGTIMGSIGALHAFTSRDDVDFFSHLEMHLRQDY 538
+ ++VG+ V SLQK +LIPGG E +VY T+ G IG L FTS +D DFF H+EMHLR ++
Sbjct: 1093 MNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEH 1152
Query: 537 PPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILRKLEEVR 358
PPLCGRDH+++RS YFPVK+VIDGDLCEQF ++ + Q+ +++ELDRTP E+ +KLE++R
Sbjct: 1153 PPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIR 1212
Query: 357 NK 352
+
Sbjct: 1213 TR 1214
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 624,468,324
Number of Sequences: 1393205
Number of extensions: 13675140
Number of successful extensions: 30730
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 29745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30710
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
