Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004795A_C01 KMC004795A_c01
(690 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180875.1| putative receptor-like protein kinase; protein ... 57 2e-07
ref|NP_201198.1| leucine-rich repeat transmembrane protein kinas... 53 5e-06
dbj|BAC06203.1| putative receptor protein kinase [Oryza sativa (... 42 0.008
ref|NP_173166.1| putative leucine-rich receptor protein kinase; ... 42 0.008
gb|AAO17351.1| Hypothetical protein [Oryza sativa (japonica cult... 42 0.010
>ref|NP_180875.1| putative receptor-like protein kinase; protein id: At2g33170.1
[Arabidopsis thaliana] gi|25408249|pir||B84742 probable
receptor-like protein kinase [imported] - Arabidopsis
thaliana gi|2924777|gb|AAC04906.1| putative receptor-like
protein kinase [Arabidopsis thaliana]
Length = 1124
Score = 57.4 bits (137), Expect = 2e-07
Identities = 30/51 (58%), Positives = 37/51 (71%)
Frame = -2
Query: 689 HMLTVLXLALLCTSMSPSKRPTMREVVSMLILSNEREGNLTLTQTYNHDLP 537
HM+TV +A+LCT SPS RPTMREVV MLI S ER G + ++ T + DLP
Sbjct: 1070 HMITVTKIAVLCTKSSPSDRPTMREVVLMLIESGERAGKVIVSTTCS-DLP 1119
>ref|NP_201198.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g63930.1 [Arabidopsis thaliana]
gi|8777306|dbj|BAA96896.1| receptor-like protein kinase
[Arabidopsis thaliana]
Length = 1102
Score = 52.8 bits (125), Expect = 5e-06
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = -2
Query: 689 HMLTVLXLALLCTSMSPSKRPTMREVVSMLILSNEREG 576
HMLTVL +ALLCTS+SP RP+MR+VV MLI S EG
Sbjct: 1049 HMLTVLKIALLCTSVSPVARPSMRQVVLMLIESERSEG 1086
>dbj|BAC06203.1| putative receptor protein kinase [Oryza sativa (japonica
cultivar-group)] gi|22202670|dbj|BAC07328.1| putative
receptor protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 964
Score = 42.0 bits (97), Expect = 0.008
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = -2
Query: 686 MLTVLXLALLCTSMSPSKRPTMREVVSMLI 597
M VL +A+LCT PS+RPTMREVV MLI
Sbjct: 917 MTKVLNIAILCTVQLPSERPTMREVVKMLI 946
>ref|NP_173166.1| putative leucine-rich receptor protein kinase; protein id:
At1g17230.1 [Arabidopsis thaliana]
gi|25518557|pir||E86308 hypothetical protein F20D23.7 -
Arabidopsis thaliana gi|5734762|gb|AAD50027.1|AC007651_22
Similar to leucine-rich receptor-like protein kinase
[Arabidopsis thaliana]
Length = 1133
Score = 42.0 bits (97), Expect = 0.008
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = -2
Query: 686 MLTVLXLALLCTSMSPSKRPTMREVVSMLILSNEREGNLTLTQT 555
M VL +AL CTS SP+ RPTMREVV+M+ E G+ +L+ +
Sbjct: 1044 MSLVLKIALFCTSNSPASRPTMREVVAMI---TEARGSSSLSSS 1084
>gb|AAO17351.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1030
Score = 41.6 bits (96), Expect = 0.010
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = -2
Query: 686 MLTVLXLALLCTSMSPSKRPTMREVVSML 600
ML VL +A+LCT+ SP RPTMR+VV+ML
Sbjct: 967 MLLVLRVAVLCTAKSPKDRPTMRDVVTML 995
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,175,278
Number of Sequences: 1393205
Number of extensions: 11386223
Number of successful extensions: 27309
Number of sequences better than 10.0: 144
Number of HSP's better than 10.0 without gapping: 26009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27293
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
