Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004794A_C01 KMC004794A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD39534.2| cellulose synthase catalytic subunit [Gossypium h... 160 1e-38
ref|NP_196136.1| cellulose synthase catalytic subunit (gb|AAC393... 156 2e-37
pir||T52054 cellulose synthase (EC 2.4.1.-) catalytic subunit [v... 156 2e-37
gb|AAK76634.2| putative cellulose synthase catalytic subunit [Ar... 156 2e-37
gb|AAF89964.1|AF200528_1 cellulose synthase-4 [Zea mays] 155 3e-37
>gb|AAD39534.2| cellulose synthase catalytic subunit [Gossypium hirsutum]
Length = 1067
Score = 160 bits (405), Expect = 1e-38
Identities = 72/77 (93%), Positives = 76/77 (98%)
Frame = -3
Query: 578 GYQSWGPLFGKLFFAFWVIVHLYPFLRGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDP 399
GYQSWGPLFGKLFFAFWVI+HLYPFL+GLMGRQNRTPTIVVVWSILLASIFSLLWVRIDP
Sbjct: 991 GYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDP 1050
Query: 398 FTTQVTGPKVEECGINC 348
FTT+VTGP VE+CGINC
Sbjct: 1051 FTTRVTGPDVEQCGINC 1067
>ref|NP_196136.1| cellulose synthase catalytic subunit (gb|AAC39336.1); protein id:
At5g05170.1, supported by cDNA: gi_2827142 [Arabidopsis
thaliana] gi|9759258|dbj|BAB09693.1| cellulose synthase
catalytic subunit [Arabidopsis thaliana]
gi|26983832|gb|AAN86168.1| putative cellulose synthase
catalytic subunit [Arabidopsis thaliana]
Length = 1065
Score = 156 bits (395), Expect = 2e-37
Identities = 70/77 (90%), Positives = 75/77 (96%)
Frame = -3
Query: 578 GYQSWGPLFGKLFFAFWVIVHLYPFLRGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDP 399
GYQSWGPLFGKLFFAFWVIVHLYPFL+GLMGRQNRTPTIVVVWS+LLASIFSLLWVRIDP
Sbjct: 989 GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDP 1048
Query: 398 FTTQVTGPKVEECGINC 348
FT++VTGP + ECGINC
Sbjct: 1049 FTSRVTGPDILECGINC 1065
>pir||T52054 cellulose synthase (EC 2.4.1.-) catalytic subunit [validated] -
Arabidopsis thaliana gi|2827143|gb|AAC39336.1| cellulose
synthase catalytic subunit [Arabidopsis thaliana]
Length = 1065
Score = 156 bits (395), Expect = 2e-37
Identities = 70/77 (90%), Positives = 75/77 (96%)
Frame = -3
Query: 578 GYQSWGPLFGKLFFAFWVIVHLYPFLRGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDP 399
GYQSWGPLFGKLFFAFWVIVHLYPFL+GLMGRQNRTPTIVVVWS+LLASIFSLLWVRIDP
Sbjct: 989 GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDP 1048
Query: 398 FTTQVTGPKVEECGINC 348
FT++VTGP + ECGINC
Sbjct: 1049 FTSRVTGPDILECGINC 1065
>gb|AAK76634.2| putative cellulose synthase catalytic subunit [Arabidopsis
thaliana]
Length = 109
Score = 156 bits (395), Expect = 2e-37
Identities = 70/77 (90%), Positives = 75/77 (96%)
Frame = -3
Query: 578 GYQSWGPLFGKLFFAFWVIVHLYPFLRGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDP 399
GYQSWGPLFGKLFFAFWVIVHLYPFL+GLMGRQNRTPTIVVVWS+LLASIFSLLWVRIDP
Sbjct: 33 GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDP 92
Query: 398 FTTQVTGPKVEECGINC 348
FT++VTGP + ECGINC
Sbjct: 93 FTSRVTGPDILECGINC 109
>gb|AAF89964.1|AF200528_1 cellulose synthase-4 [Zea mays]
Length = 1077
Score = 155 bits (393), Expect = 3e-37
Identities = 70/77 (90%), Positives = 74/77 (95%)
Frame = -3
Query: 578 GYQSWGPLFGKLFFAFWVIVHLYPFLRGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDP 399
GYQSWGPLFGKLFFAFWVIVHLYPFL+GLMGRQNRTPTIVVVW+ILLASIFSLLWVRIDP
Sbjct: 1001 GYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWAILLASIFSLLWVRIDP 1060
Query: 398 FTTQVTGPKVEECGINC 348
FTT+VTGP + CGINC
Sbjct: 1061 FTTRVTGPDTQTCGINC 1077
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,578,094
Number of Sequences: 1393205
Number of extensions: 11568278
Number of successful extensions: 29015
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 27910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28975
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
