Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004793A_C01 KMC004793A_c01
(477 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172004.1| similar to DNA repair protein-like; protein id:... 93 1e-18
pir||D86185 hypothetical protein [imported] - Arabidopsis thalia... 93 1e-18
gb|EAA17582.1| similar nucleotide excision repair proteins-relat... 64 8e-10
ref|NP_701848.1| DNA repair protein rhp16, putative [Plasmodium ... 63 1e-09
ref|NP_171767.1| hypothetical protein; protein id: At1g02670.1 [... 59 2e-08
>ref|NP_172004.1| similar to DNA repair protein-like; protein id: At1g05120.1
[Arabidopsis thaliana]
Length = 833
Score = 93.2 bits (230), Expect = 1e-18
Identities = 43/54 (79%), Positives = 51/54 (93%)
Frame = -1
Query: 477 QPIRIVRFVIENTIEERILKLQEKKELVFEGTVGGSSEALGKLTEADLRFLFVT 316
+PIR+VRF+IENT+EERIL+LQ+KKELVFEGTVGGS EA+GKLTE D+RFLF T
Sbjct: 780 KPIRVVRFIIENTVEERILRLQKKKELVFEGTVGGSQEAIGKLTEEDMRFLFTT 833
>pir||D86185 hypothetical protein [imported] - Arabidopsis thaliana
gi|4056415|gb|AAC97989.1|AAC97989 Similar to the end of
DNA repair protein gb|X74615 (rad8) gene. [Arabidopsis
thaliana]
Length = 95
Score = 93.2 bits (230), Expect = 1e-18
Identities = 43/54 (79%), Positives = 51/54 (93%)
Frame = -1
Query: 477 QPIRIVRFVIENTIEERILKLQEKKELVFEGTVGGSSEALGKLTEADLRFLFVT 316
+PIR+VRF+IENT+EERIL+LQ+KKELVFEGTVGGS EA+GKLTE D+RFLF T
Sbjct: 42 KPIRVVRFIIENTVEERILRLQKKKELVFEGTVGGSQEAIGKLTEEDMRFLFTT 95
>gb|EAA17582.1| similar nucleotide excision repair proteins-related [Plasmodium
yoelii yoelii]
Length = 818
Score = 63.9 bits (154), Expect = 8e-10
Identities = 28/47 (59%), Positives = 39/47 (82%)
Frame = -1
Query: 462 VRFVIENTIEERILKLQEKKELVFEGTVGGSSEALGKLTEADLRFLF 322
+RF+IENT+EE+I++LQ KK+LVF+ T+G S A+ KLT+ DL FLF
Sbjct: 770 IRFIIENTVEEKIIQLQNKKQLVFDCTIGNSGSAMQKLTKEDLAFLF 816
>ref|NP_701848.1| DNA repair protein rhp16, putative [Plasmodium falciparum 3D7]
gi|23497022|gb|AAN36572.1|AE014852_16 DNA repair protein
rhp16, putative [Plasmodium falciparum 3D7]
Length = 1647
Score = 63.2 bits (152), Expect = 1e-09
Identities = 27/47 (57%), Positives = 39/47 (82%)
Frame = -1
Query: 462 VRFVIENTIEERILKLQEKKELVFEGTVGGSSEALGKLTEADLRFLF 322
+RF+IENT+EE+I++LQ KK+LVF+ T+G S A+ KL++ DL FLF
Sbjct: 1599 IRFIIENTVEEKIIQLQNKKQLVFDSTIGDSGNAMQKLSKEDLAFLF 1645
>ref|NP_171767.1| hypothetical protein; protein id: At1g02670.1 [Arabidopsis
thaliana]
Length = 678
Score = 59.3 bits (142), Expect = 2e-08
Identities = 29/53 (54%), Positives = 42/53 (78%), Gaps = 1/53 (1%)
Frame = -1
Query: 477 QPIRIVRFVIENTIEERILKLQEKKELVFEGTVGGSSEA-LGKLTEADLRFLF 322
+P+R+VRF++E T+EE+IL LQ+KKE +FE T+G S EA + KL E D++ LF
Sbjct: 625 KPVRVVRFIMEKTVEEKILTLQKKKEDLFESTLGDSEEAVVQKLGEDDIKSLF 677
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 388,161,450
Number of Sequences: 1393205
Number of extensions: 7880843
Number of successful extensions: 19549
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 18917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19535
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
