Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004792A_C01 KMC004792A_c01
(675 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB63596.1| P0403C05.18 [Oryza sativa (japonica cultivar-gro... 33 2.7
emb|CAD40817.1| OSJNBa0006B20.8 [Oryza sativa (japonica cultivar... 33 3.6
ref|NP_180537.1| hypothetical protein; protein id: At2g29760.1 [... 26 3.9
dbj|BAB40170.1| P0707D10.28 [Oryza sativa (japonica cultivar-gro... 33 4.6
dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa (jap... 33 4.6
>dbj|BAB63596.1| P0403C05.18 [Oryza sativa (japonica cultivar-group)]
Length = 482
Score = 33.5 bits (75), Expect = 2.7
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 453 IHSYVHEKDFEDEVELDIILVDVYSKCGLAIKG 355
IH YV ++ +E +V L LVD+Y KCG G
Sbjct: 240 IHEYVQKQGWEMDVVLGTALVDMYGKCGKVSDG 272
>emb|CAD40817.1| OSJNBa0006B20.8 [Oryza sativa (japonica cultivar-group)]
Length = 717
Score = 33.1 bits (74), Expect = 3.6
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -1
Query: 528 EVRLASFGECS*HVLCCRWH*RRK*IHSYVHEKDFEDEVELDIILVDVYSKC 373
+V LAS C C H R+ +H ++ ++DF+ V L LVDVY KC
Sbjct: 153 DVTLASVLGCC--AECLDLHGARQ-LHGHIAKRDFQSNVILGTALVDVYGKC 201
>ref|NP_180537.1| hypothetical protein; protein id: At2g29760.1 [Arabidopsis
thaliana] gi|25345458|pir||C84700 hypothetical protein
At2g29760 [imported] - Arabidopsis thaliana
gi|3582328|gb|AAC35225.1| hypothetical protein
[Arabidopsis thaliana]
Length = 738
Score = 25.8 bits (55), Expect(2) = 3.9
Identities = 10/28 (35%), Positives = 15/28 (52%)
Frame = -1
Query: 453 IHSYVHEKDFEDEVELDIILVDVYSKCG 370
IHSY+ + + L+ +YSKCG
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCG 414
Score = 25.8 bits (55), Expect(2) = 3.9
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 560 LFHEMIRCSRMKLD*PLLVSVLNMCFVVGGTNAANRFTLTFMKK 429
+FHE+ MKL+ LVS L+ C VG R+ +++KK
Sbjct: 351 VFHELQLQKNMKLNQITLVSTLSACAQVGALE-LGRWIHSYIKK 393
>dbj|BAB40170.1| P0707D10.28 [Oryza sativa (japonica cultivar-group)]
gi|21901980|dbj|BAC05531.1| P0038D11.7 [Oryza sativa
(japonica cultivar-group)]
Length = 669
Score = 32.7 bits (73), Expect = 4.6
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -1
Query: 453 IHSYVHEKDFEDEVELDIILVDVYSKCG 370
IHSY+ E + ++ L+ LVD+Y+KCG
Sbjct: 446 IHSYIEEMNVAKDLCLESALVDMYAKCG 473
>dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 604
Score = 32.7 bits (73), Expect = 4.6
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -1
Query: 453 IHSYVHEKDFEDEVELDIILVDVYSKCGL 367
+H+++ K ++EL L+D+Y+KCGL
Sbjct: 255 VHAFIDRKGITVDLELSTALIDMYAKCGL 283
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,390,147
Number of Sequences: 1393205
Number of extensions: 10936925
Number of successful extensions: 23548
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 22638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23539
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
