Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004790A_C01 KMC004790A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198446.2| DNA helicase-like; protein id: At5g35970.1 [Ara... 87 1e-16
dbj|BAB09253.1| DNA helicase-like [Arabidopsis thaliana] 87 1e-16
ref|XP_155411.1| hypothetical protein XP_155411 [Mus musculus] 33 2.0
gb|AAF15099.1| envelope protein [Phascolarctos cinereus] 32 4.5
>ref|NP_198446.2| DNA helicase-like; protein id: At5g35970.1 [Arabidopsis thaliana]
Length = 1037
Score = 87.0 bits (214), Expect = 1e-16
Identities = 37/48 (77%), Positives = 44/48 (91%)
Frame = -1
Query: 522 AVVCDSSTICHNTFLARLMRHIRRFGRIKHVEPGNFGGYGLGMNPILP 379
AVVCDSSTICHNTFLARL+RHIR FGR+KH +PG+ GG GLG++P+LP
Sbjct: 987 AVVCDSSTICHNTFLARLLRHIRYFGRVKHADPGSLGGSGLGLDPMLP 1034
>dbj|BAB09253.1| DNA helicase-like [Arabidopsis thaliana]
Length = 750
Score = 87.0 bits (214), Expect = 1e-16
Identities = 37/48 (77%), Positives = 44/48 (91%)
Frame = -1
Query: 522 AVVCDSSTICHNTFLARLMRHIRRFGRIKHVEPGNFGGYGLGMNPILP 379
AVVCDSSTICHNTFLARL+RHIR FGR+KH +PG+ GG GLG++P+LP
Sbjct: 700 AVVCDSSTICHNTFLARLLRHIRYFGRVKHADPGSLGGSGLGLDPMLP 747
>ref|XP_155411.1| hypothetical protein XP_155411 [Mus musculus]
Length = 179
Score = 33.1 bits (74), Expect = 2.0
Identities = 18/43 (41%), Positives = 24/43 (54%)
Frame = +2
Query: 377 EGNMGFIPRPYPPKLPGSTCLILPKRLM*RISLARKVLWHIVE 505
EG + F P PY STCL+ PK+ M R RK L+ I++
Sbjct: 70 EGELAFAPPPYASS--ASTCLLEPKQSMRRNKYLRKDLFRIMQ 110
>gb|AAF15099.1| envelope protein [Phascolarctos cinereus]
Length = 659
Score = 32.0 bits (71), Expect = 4.5
Identities = 17/35 (48%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Frame = +3
Query: 129 LCITKVSPNHQHGTNMLEALTSH*VNKY-LPTNAS 230
LCI KV P HQH N+ L + +KY LP+N S
Sbjct: 375 LCIGKVPPTHQHLCNLTIPLNASHTHKYLLPSNRS 409
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,186,412
Number of Sequences: 1393205
Number of extensions: 9906280
Number of successful extensions: 18342
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18341
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
