Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004789A_C02 KMC004789A_c02
(683 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_346878.1| ABC transporter, permease component [Clostridiu... 32 8.1
>ref|NP_346878.1| ABC transporter, permease component [Clostridium acetobutylicum]
gi|25500441|pir||G96928 ABC transporter, permease
component CAC0237 [imported] - Clostridium
acetobutylicum gi|15023072|gb|AAK78218.1|AE007537_3 ABC
transporter, permease component [Clostridium
acetobutylicum]
Length = 354
Score = 32.0 bits (71), Expect = 8.1
Identities = 20/74 (27%), Positives = 37/74 (49%), Gaps = 2/74 (2%)
Frame = +3
Query: 435 HKQSDNFQFNTKKVLLIIEI--PNTNYIKIKDIKNSKKWGLLSI*DNLHRAVHCRLNKAC 608
+++ DNF ++ I I N+N I D++N K + + D +H + +K
Sbjct: 61 YQEIDNFIKGSEAFRNKINIIKANSNKKAILDLENKKYDAYIHVDDKNMLKLHVKADKID 120
Query: 609 TFLYSVVANFMLHC 650
+F YS++ NF+ C
Sbjct: 121 SFDYSIIKNFVYSC 134
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 583,959,609
Number of Sequences: 1393205
Number of extensions: 12814829
Number of successful extensions: 22839
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22785
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
