Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004787A_C01 KMC004787A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00071334.1| hypothetical protein [Trichodesmium erythraeu... 33 3.1
gb|EAA36982.1| GLP_514_15116_17125 [Giardia lamblia ATCC 50803] 32 4.0
ref|NP_113933.1| restin (Reed-Steinberg cell-espressed intermedi... 32 6.9
gb|EAA30411.1| hypothetical protein [Neurospora crassa] 31 9.0
ref|NP_509663.1| Putative protein, nematode specific [Caenorhabd... 31 9.0
>ref|ZP_00071334.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 285
Score = 32.7 bits (73), Expect = 3.1
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = -1
Query: 326 LGSFLFFCFCINGV*LFHGIYPSLLIQFDAVLVMLERELVMLIVLETGLYGSVLYCCLVK 147
+G FL+ + G+ L + I+ +L +QFD+++ L L L L+ L G + L
Sbjct: 54 VGIFLYISLLLPGISLINTIFNNLSLQFDSLIYQLPTWLKFLSYLDNAL-GLLFKLILFT 112
Query: 146 VYALPFKFQLV 114
++ L F LV
Sbjct: 113 IFLLIIGFLLV 123
>gb|EAA36982.1| GLP_514_15116_17125 [Giardia lamblia ATCC 50803]
Length = 669
Score = 32.3 bits (72), Expect = 4.0
Identities = 14/42 (33%), Positives = 24/42 (56%)
Frame = +1
Query: 295 MQKQKNKKEPSVPISNPSTSQCSN*YAAGYRVSVSNLRDHLL 420
MQ K+P +P+++ T+ SN A + S +++ DHLL
Sbjct: 237 MQDNSKHKKPHIPVASDKTASSSNGVARRQQTSTADIVDHLL 278
>ref|NP_113933.1| restin (Reed-Steinberg cell-espressed intermediate filament-asso;
restin (Reed-Steinberg cell-espressed intermediate
filament-associated protein) [Rattus norvegicus]
gi|8247352|emb|CAB92974.1| CLIP-170 [Rattus norvegicus]
Length = 1320
Score = 31.6 bits (70), Expect = 6.9
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 151 TKQQYKTEP*SPVSKTISITSSLSNITRTASNWISRL 261
T +P PV+K S T +SN+T+TAS IS L
Sbjct: 162 TPSNIPQKPSQPVAKETSATPQISNLTKTASESISNL 198
>gb|EAA30411.1| hypothetical protein [Neurospora crassa]
Length = 1786
Score = 31.2 bits (69), Expect = 9.0
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = -2
Query: 556 RKLMKIVAKIEKFLEAANGKDNT*MLKIMSCCGKEVCTAI*SQVALGGDPGGCLLRRG 383
+K+ ++VA +++ ++ D+ +++ + C KE +I + GG G CL + G
Sbjct: 1539 KKMQELVAALDQEIDTMQHLDHVNIVQYLGCERKETSISIFLEYISGGSIGSCLRKHG 1596
>ref|NP_509663.1| Putative protein, nematode specific [Caenorhabditis elegans]
gi|7499603|pir||T21214 hypothetical protein F21G4.6 -
Caenorhabditis elegans gi|3876204|emb|CAB02662.1|
Hypothetical protein F21G4.6 [Caenorhabditis elegans]
Length = 1721
Score = 31.2 bits (69), Expect = 9.0
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -1
Query: 221 ERELVMLIVLETGLYGSVLYCCLVKVYALPFKFQLVDISGYSCFLNDLDVLNNYLFNSLK 42
E E + L ++ +GL + V++Y L LV Y F++ +D+L+ YL LK
Sbjct: 1429 EPESIALKLVSSGLSNDIK---TVRIYTLAGVLYLVQSDSYESFISSIDILSAYLEKYLK 1485
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,881,506
Number of Sequences: 1393205
Number of extensions: 9763408
Number of successful extensions: 23586
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23558
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
