Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004786A_C01 KMC004786A_c01
(428 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_705863.1| hypothetical protein [Plasmodium falciparum 3D7... 31 3.1
emb|CAB54223.2| Hypothetical protein F10B5.8 [Caenorhabditis ele... 30 5.3
ref|NP_756472.1| Hypothetical protein yidS precursor [Escherichi... 30 5.3
ref|NP_495706.1| Putative cytoplasmic protein of ancient origin ... 30 5.3
ref|NP_418145.1| orf, hypothetical protein [Escherichia coli K12... 30 5.3
>ref|NP_705863.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|7672225|emb|CAB89486.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 524
Score = 31.2 bits (69), Expect = 3.1
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +2
Query: 86 SNICLNEQHLI*GENN*NRKQMDSWVEEQDTKNYQRCILTQNLKALELWITSLIKSSPHP 265
+N+ + + +++ E+N N K W + QD KN + QN + ++ ITS+ K S
Sbjct: 100 NNLNIPKNYILNVEDNENLKNFKLWKKLQDIKNEKNEEEIQNYEMEDVEITSMSKLSTEE 159
Query: 266 NL 271
N+
Sbjct: 160 NM 161
>emb|CAB54223.2| Hypothetical protein F10B5.8 [Caenorhabditis elegans]
Length = 608
Score = 30.4 bits (67), Expect = 5.3
Identities = 19/68 (27%), Positives = 33/68 (47%)
Frame = +1
Query: 217 GIRIMDHISYKVFSSPKLNQCGTPTPHLNSQLRFGTPHLYGFELKLKQPLELRNAQWA*C 396
G R+ D++ + S L+ CG+ PH++ + + P + K P+ L + + C
Sbjct: 58 GGRLTDYLDCVIISHFHLDHCGS-LPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQC 116
Query: 397 *KKGEKNF 420
KGE NF
Sbjct: 117 DIKGETNF 124
>ref|NP_756472.1| Hypothetical protein yidS precursor [Escherichia coli CFT073]
gi|26110862|gb|AAN83046.1|AE016769_161 Hypothetical
protein yidS precursor [Escherichia coli CFT073]
Length = 373
Score = 30.4 bits (67), Expect = 5.3
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 176 TKNYQRCILTQNLKALELWITSLIKSS 256
T+NYQR + N A +LW+ SLI +S
Sbjct: 95 TRNYQRSYININRHAFDLWMKSLIPAS 121
>ref|NP_495706.1| Putative cytoplasmic protein of ancient origin [Caenorhabditis
elegans] gi|7498794|pir||T20694 hypothetical protein
F10B5.8 - Caenorhabditis elegans
Length = 474
Score = 30.4 bits (67), Expect = 5.3
Identities = 19/68 (27%), Positives = 33/68 (47%)
Frame = +1
Query: 217 GIRIMDHISYKVFSSPKLNQCGTPTPHLNSQLRFGTPHLYGFELKLKQPLELRNAQWA*C 396
G R+ D++ + S L+ CG+ PH++ + + P + K P+ L + + C
Sbjct: 58 GGRLTDYLDCVIISHFHLDHCGS-LPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQC 116
Query: 397 *KKGEKNF 420
KGE NF
Sbjct: 117 DIKGETNF 124
>ref|NP_418145.1| orf, hypothetical protein [Escherichia coli K12]
gi|401610|sp|P31456|YIDS_ECOLI Hypothetical protein yidS
precursor gi|7465993|pir||C65171 hypothetical 41.0 kD
protein in ibpA-gyrB intergenic region - Escherichia
coli (strain K-12) gi|290539|gb|AAA62042.1| o361
gi|1790125|gb|AAC76713.1| orf, hypothetical protein
[Escherichia coli K12]
Length = 361
Score = 30.4 bits (67), Expect = 5.3
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 176 TKNYQRCILTQNLKALELWITSLIKSS 256
T+NYQR + N A +LW+ SLI +S
Sbjct: 95 TRNYQRSYININRHAFDLWMKSLIPAS 121
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 341,287,390
Number of Sequences: 1393205
Number of extensions: 6728188
Number of successful extensions: 11194
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11186
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 6822985368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
