Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004782A_C01 KMC004782A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A84820 hypothetical protein At2g39670 [imported] - Arabidop... 47 2e-04
ref|NP_565909.1| expressed protein; protein id: At2g39670.1, sup... 47 2e-04
ref|NP_175427.1| pathogenesis-related protein 1b precursor (pr-1... 33 2.0
gb|AAF74727.1|AF251288_4 unknown [Bacteroides fragilis] 31 7.5
ref|NP_730174.1| CG32158-PA [Drosophila melanogaster] gi|2309335... 31 9.8
>pir||A84820 hypothetical protein At2g39670 [imported] - Arabidopsis thaliana
Length = 427
Score = 46.6 bits (109), Expect = 2e-04
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = -2
Query: 518 GLDANAACGQLRNEFQ*APMATDSDHLESQLPNMELAA 405
GLDA+AACGQLRN+FQ +P+ T++D ESQ P+ E A
Sbjct: 390 GLDASAACGQLRNKFQKSPLLTETDSQESQ-PDAEAVA 426
>ref|NP_565909.1| expressed protein; protein id: At2g39670.1, supported by cDNA:
gi_15809963, supported by cDNA: gi_17065473 [Arabidopsis
thaliana] gi|15809964|gb|AAL06909.1| At2g39670/F17A14.4
[Arabidopsis thaliana] gi|17065474|gb|AAL32891.1|
Unknown protein [Arabidopsis thaliana]
gi|20197047|gb|AAB97122.2| expressed protein
[Arabidopsis thaliana] gi|23197704|gb|AAN15379.1|
Unknown protein [Arabidopsis thaliana]
Length = 428
Score = 46.6 bits (109), Expect = 2e-04
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = -2
Query: 518 GLDANAACGQLRNEFQ*APMATDSDHLESQLPNMELAA 405
GLDA+AACGQLRN+FQ +P+ T++D ESQ P+ E A
Sbjct: 391 GLDASAACGQLRNKFQKSPLLTETDSQESQ-PDAEAVA 427
>ref|NP_175427.1| pathogenesis-related protein 1b precursor (pr-1b), putative;
protein id: At1g50050.1 [Arabidopsis thaliana]
Length = 226
Score = 33.1 bits (74), Expect = 2.0
Identities = 18/33 (54%), Positives = 27/33 (81%), Gaps = 2/33 (6%)
Frame = -2
Query: 518 GLDANAACGQLRNEFQ*AP-MAT-DSDHLESQL 426
GL A+AACGQLRN+FQ +P +AT + + +E++L
Sbjct: 170 GLGASAACGQLRNKFQKSPSLATAEGEVIEARL 202
>gb|AAF74727.1|AF251288_4 unknown [Bacteroides fragilis]
Length = 782
Score = 31.2 bits (69), Expect = 7.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 136 IHLVCVGERFSHVFDPSLHDIYLCSN 59
IH+ CVGE+F ++ S HD Y C N
Sbjct: 680 IHVTCVGEQFENI---SEHDFYTCMN 702
>ref|NP_730174.1| CG32158-PA [Drosophila melanogaster] gi|23093350|gb|AAN11753.1|
CG32158-PA [Drosophila melanogaster]
Length = 1065
Score = 30.8 bits (68), Expect = 9.8
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 518 GLDANAACGQLRNEFQ*APMATDSDHLE--SQLPNMELAATG*RAGN 384
GLDANA G L P SD + S +P + LA+ G AGN
Sbjct: 135 GLDANATVGNLTTATMKPPTLASSDQMTRGSSIPLLALASNGSWAGN 181
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,545,592
Number of Sequences: 1393205
Number of extensions: 10661708
Number of successful extensions: 27977
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 27479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27976
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
