Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004780A_C02 KMC004780A_c02
(635 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564290.1| expressed protein; protein id: At1g27600.1, sup... 59 4e-08
emb|CAD39333.1| OSJNBa0094O15.1 [Oryza sativa (japonica cultivar... 51 1e-05
gb|AAM18761.1|AC099325_17 putative glycosyltransferase [Oryza sa... 47 3e-04
dbj|BAB93325.1| OJ1117_G01.8 [Oryza sativa (japonica cultivar-gr... 46 5e-04
gb|AAD45998.1|AC005916_10 Contains similarity to gb|D88035 glyco... 42 0.009
>ref|NP_564290.1| expressed protein; protein id: At1g27600.1, supported by cDNA:
230979. [Arabidopsis thaliana]
gi|21592380|gb|AAM64331.1| glycoprotein-specific
UDP-glucuronyltransferase-like protein [Arabidopsis
thaliana]
Length = 308
Score = 59.3 bits (142), Expect = 4e-08
Identities = 23/38 (60%), Positives = 28/38 (73%)
Frame = -3
Query: 612 DESQMEASPHGCLKIMNWHLHLGARDIDYPKGWMLQKN 499
DES+ME P C I+NWHLHL A D+ YP+GW +QKN
Sbjct: 263 DESEMEGVPPACSSILNWHLHLDALDVPYPQGWAIQKN 300
>emb|CAD39333.1| OSJNBa0094O15.1 [Oryza sativa (japonica cultivar-group)]
Length = 235
Score = 51.2 bits (121), Expect = 1e-05
Identities = 20/34 (58%), Positives = 24/34 (69%)
Frame = -3
Query: 615 EDESQMEASPHGCLKIMNWHLHLGARDIDYPKGW 514
EDESQME P C +IMNWH+ G+ + YPKGW
Sbjct: 189 EDESQMEGIPADCSQIMNWHVPFGSESVVYPKGW 222
>gb|AAM18761.1|AC099325_17 putative glycosyltransferase [Oryza sativa (japonica
cultivar-group)]
Length = 351
Score = 46.6 bits (109), Expect = 3e-04
Identities = 20/39 (51%), Positives = 25/39 (63%)
Frame = -3
Query: 615 EDESQMEASPHGCLKIMNWHLHLGARDIDYPKGWMLQKN 499
EDE+ ME P GC KIMN+HLHL ++ Y GW +N
Sbjct: 298 EDETHMEGVPPGCSKIMNFHLHLEDKNAIYLNGWQTTQN 336
>dbj|BAB93325.1| OJ1117_G01.8 [Oryza sativa (japonica cultivar-group)]
gi|21644635|dbj|BAC01194.1| P0485G01.28 [Oryza sativa
(japonica cultivar-group)]
Length = 454
Score = 45.8 bits (107), Expect = 5e-04
Identities = 18/39 (46%), Positives = 25/39 (63%)
Frame = -3
Query: 615 EDESQMEASPHGCLKIMNWHLHLGARDIDYPKGWMLQKN 499
EDESQME C ++M W+ L ++YP GW+LQ+N
Sbjct: 408 EDESQMEGLGDNCTRVMVWNFELEPPQVNYPIGWLLQRN 446
>gb|AAD45998.1|AC005916_10 Contains similarity to gb|D88035 glycoprotein specific
UDP-glucuronyltransferase from Rattus norvegicus.
[Arabidopsis thaliana]
Length = 405
Score = 41.6 bits (96), Expect = 0.009
Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -3
Query: 612 DESQMEASPHGCLKIMNWHLHLGARDID-YP 523
DES+ME P C I+NWHLHL A D+ YP
Sbjct: 349 DESEMEGVPPACSSILNWHLHLDALDVSTYP 379
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 557,630,187
Number of Sequences: 1393205
Number of extensions: 12111409
Number of successful extensions: 23191
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 22642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23183
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
