Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004779A_C01 KMC004779A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL36317.1| unknown protein [Arabidopsis thaliana] gi|2046587... 78 7e-14
gb|AAM67361.1| unknown [Arabidopsis thaliana] 78 7e-14
ref|NP_566696.1| unknown protein; protein id: At3g21865.1, suppo... 78 7e-14
>gb|AAL36317.1| unknown protein [Arabidopsis thaliana] gi|20465875|gb|AAM20042.1|
unknown protein [Arabidopsis thaliana]
Length = 283
Score = 78.2 bits (191), Expect = 7e-14
Identities = 35/48 (72%), Positives = 42/48 (86%)
Frame = -3
Query: 561 DWHIDSNPEIISQLARFIKYQLHVSPFRTERTAANVFSAPSLEQFFGS 418
DWHID+NPEI +QLARFIKYQLHV+ + ERTA NVF++ S+EQFFGS
Sbjct: 235 DWHIDTNPEISTQLARFIKYQLHVATVKPERTAPNVFTSQSIEQFFGS 282
>gb|AAM67361.1| unknown [Arabidopsis thaliana]
Length = 151
Score = 78.2 bits (191), Expect = 7e-14
Identities = 35/48 (72%), Positives = 42/48 (86%)
Frame = -3
Query: 561 DWHIDSNPEIISQLARFIKYQLHVSPFRTERTAANVFSAPSLEQFFGS 418
DWHID+NPEI +QLARFIKYQLHV+ + ERTA NVF++ S+EQFFGS
Sbjct: 103 DWHIDTNPEISTQLARFIKYQLHVATVKPERTAPNVFTSQSIEQFFGS 150
>ref|NP_566696.1| unknown protein; protein id: At3g21865.1, supported by cDNA:
250935., supported by cDNA: gi_20465874 [Arabidopsis
thaliana]
Length = 100
Score = 78.2 bits (191), Expect = 7e-14
Identities = 35/48 (72%), Positives = 42/48 (86%)
Frame = -3
Query: 561 DWHIDSNPEIISQLARFIKYQLHVSPFRTERTAANVFSAPSLEQFFGS 418
DWHID+NPEI +QLARFIKYQLHV+ + ERTA NVF++ S+EQFFGS
Sbjct: 52 DWHIDTNPEISTQLARFIKYQLHVATVKPERTAPNVFTSQSIEQFFGS 99
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,121,368
Number of Sequences: 1393205
Number of extensions: 9488818
Number of successful extensions: 21325
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21319
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
