Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004776A_C01 KMC004776A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_763850.1| conserved hypothetical protein [Staphylococcus ... 32 6.2
gb|AAA49014.1| pot. alt. progesterone receptor; putative 32 6.2
gb|AAA49013.1| progesterone receptor 32 6.2
gb|AAG52177.1|AC012329_4 hypothetical protein; 45165-40041 [Arab... 28 6.6
gb|AAK62624.1| AT3g49400/F2K15_260 [Arabidopsis thaliana] 28 6.6
>ref|NP_763850.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228] gi|27314755|gb|AAO03892.1|AE016744_295 conserved
hypothetical protein [Staphylococcus epidermidis ATCC
12228]
Length = 175
Score = 31.6 bits (70), Expect = 6.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 250 SFESFYLFPLFNHHRSFANTAHLHIILSECSSREGVFGSSEFQL 381
SF Y++ L+N H T H+ ++ S+ S + +FGS +++
Sbjct: 84 SFIERYVYELYNKH-----TTHITVVTSDMSEQHAIFGSGAYRI 122
>gb|AAA49014.1| pot. alt. progesterone receptor; putative
Length = 659
Score = 31.6 bits (70), Expect = 6.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -2
Query: 383 SNWNSEEPNTPSRLLHSLNIICRCAVLAKLRW 288
+ +++ +P TPS LL SLN +C +L ++W
Sbjct: 427 AGYDNTKPETPSSLLTSLNHLCETQLLCVVKW 458
>gb|AAA49013.1| progesterone receptor
Length = 787
Score = 31.6 bits (70), Expect = 6.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -2
Query: 383 SNWNSEEPNTPSRLLHSLNIICRCAVLAKLRW 288
+ +++ +P TPS LL SLN +C +L ++W
Sbjct: 555 AGYDNTKPETPSSLLTSLNHLCETQLLCVVKW 586
>gb|AAG52177.1|AC012329_4 hypothetical protein; 45165-40041 [Arabidopsis thaliana]
Length = 798
Score = 28.5 bits (62), Expect(2) = 6.6
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -2
Query: 359 NTPSRLLHSLNIICRCAVLAKLR 291
+ PSRLLH LN+I R +L++L+
Sbjct: 544 DVPSRLLHILNVISRRVMLSELK 566
Score = 21.6 bits (44), Expect(2) = 6.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 177 QREL*ERLVDFRFSSFQNSMSS 112
+REL ERLV FS++ + SS
Sbjct: 596 ERELRERLVGLSFSAYLLAESS 617
>gb|AAK62624.1| AT3g49400/F2K15_260 [Arabidopsis thaliana]
Length = 793
Score = 28.5 bits (62), Expect(2) = 6.6
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -2
Query: 359 NTPSRLLHSLNIICRCAVLAKLR 291
+ PSRLLH LN+I R +L++L+
Sbjct: 638 DVPSRLLHILNVISRRVMLSELK 660
Score = 21.6 bits (44), Expect(2) = 6.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 177 QREL*ERLVDFRFSSFQNSMSS 112
+REL ERLV FS++ + SS
Sbjct: 690 ERELRERLVGLSFSAYLLAESS 711
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,080,756
Number of Sequences: 1393205
Number of extensions: 8870773
Number of successful extensions: 16695
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16692
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
