Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004775A_C01 KMC004775A_c01
(728 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180345.1| hypothetical protein; protein id: At2g27770.1 [... 190 2e-47
gb|AAM76760.1| hypothetical protein [Arabidopsis thaliana] 183 2e-45
ref|NP_565847.1| expressed protein; protein id: At2g36470.1, sup... 144 1e-33
gb|AAM61047.1| unknown [Arabidopsis thaliana] 143 2e-33
ref|NP_198167.1| putative protein; protein id: At5g28150.1, supp... 122 5e-27
>ref|NP_180345.1| hypothetical protein; protein id: At2g27770.1 [Arabidopsis
thaliana] gi|25407920|pir||G84676 hypothetical protein
At2g27770 [imported] - Arabidopsis thaliana
gi|3860255|gb|AAC73023.1| hypothetical protein
[Arabidopsis thaliana] gi|26449502|dbj|BAC41877.1|
unknown protein [Arabidopsis thaliana]
gi|28950899|gb|AAO63373.1| At2g27770 [Arabidopsis
thaliana]
Length = 320
Score = 190 bits (483), Expect = 2e-47
Identities = 104/180 (57%), Positives = 132/180 (72%), Gaps = 7/180 (3%)
Frame = -1
Query: 719 FYVVVLVDSELGLRLGDKDDEIDETLDLSIMKG-NFSMVSRSERFSGT-TVYATRAKFSE 546
FYV+VLVD ++GL LGD +E S G +FS+VSR E F+G T Y+T+ +F E
Sbjct: 141 FYVIVLVDGQMGLLLGDSSEETLRKKGFSGDIGFDFSLVSRQEHFTGNNTFYSTKVRFVE 200
Query: 545 SGDFHDILIRCVAEEEGLKM-NH--VLSVCLDKKTVFQVKRLRWNFRGNQTIFVDGLVVD 375
+GD H+I+IRC E EGLK NH VLSVC+DKKTV +VKRL+WNFRGNQTIF+DGL+VD
Sbjct: 201 TGDSHEIVIRCNKETEGLKQSNHYPVLSVCIDKKTVIKVKRLQWNFRGNQTIFLDGLLVD 260
Query: 374 MMWDVHDWLF-NPNSDSSAVFLFRTRSGLD-SRLWFEEKNLQTCKEHERIGFSLLICACK 201
+MWDVHDW F N + AVF+FRTR+GLD SRLW EEK ++ + +++ FSL I ACK
Sbjct: 261 LMWDVHDWFFSNQGACGRAVFMFRTRNGLDSSRLWLEEKIVKK-DQQDKLDFSLFIYACK 319
>gb|AAM76760.1| hypothetical protein [Arabidopsis thaliana]
Length = 320
Score = 183 bits (464), Expect = 2e-45
Identities = 102/180 (56%), Positives = 129/180 (71%), Gaps = 7/180 (3%)
Frame = -1
Query: 719 FYVVVLVDSELGLRLGDKDDEIDETLDLSIMKG-NFSMVSRSERFSGT-TVYATRAKFSE 546
FYV+VLVD +GL LGD +E S G +FS+ SR E F+G T Y+T+ +F E
Sbjct: 141 FYVIVLVDGSMGLLLGDSSEETLRKKGFSGDIGFDFSLXSRQEHFTGNNTFYSTKVRFVE 200
Query: 545 SGDFHDILIRCVAEEEGLKM-NH--VLSVCLDKKTVFQVKRLRWNFRGNQTIFVDGLVVD 375
+GD H+I+IRC E EGLK NH VLSVC+DKKTV +VKRL+WNFRGNQTIF+DGL+VD
Sbjct: 201 TGDSHEIVIRCNKETEGLKQSNHYPVLSVCIDKKTVIKVKRLQWNFRGNQTIFLDGLLVD 260
Query: 374 MMWDVHDWLF-NPNSDSSAVFLFRTRSGLD-SRLWFEEKNLQTCKEHERIGFSLLICACK 201
+MWDVHDW F N + AVF+FRTR+GLD SRLW EEK ++ + +++ FSL I A K
Sbjct: 261 LMWDVHDWFFSNQGACGRAVFMFRTRNGLDSSRLWLEEKIVKK-DQQDKLDFSLFIYARK 319
>ref|NP_565847.1| expressed protein; protein id: At2g36470.1, supported by cDNA:
109103. [Arabidopsis thaliana] gi|25408477|pir||B84781
hypothetical protein At2g36470 [imported] - Arabidopsis
thaliana gi|4581147|gb|AAD24631.1| expressed protein
[Arabidopsis thaliana]
Length = 327
Score = 144 bits (363), Expect = 1e-33
Identities = 89/212 (41%), Positives = 122/212 (56%), Gaps = 39/212 (18%)
Frame = -1
Query: 719 FYVVVLVDSELGLRLGDKDDEIDETLDLSIMKGNFSMVSRSERFSGTTVYATRAKFSESG 540
F+VVV+V+SE+ L +GD D E D + S VS++ERFSGT T+A+FS+ G
Sbjct: 121 FFVVVVVNSEITLGVGDVDHERDTSSSSSWR------VSKTERFSGTCWLTTKAQFSDVG 174
Query: 539 DFHDILIRCVAE-----EEG----LKMNHVLSVCLDKKTVFQVKRLRWNFRGNQTIFVDG 387
H+I I+C EEG +K +SV +DK+ VF VK+L+WNFRGNQT+F DG
Sbjct: 175 RKHEIQIQCGGGGGGGGEEGYLWKVKSPETMSVYVDKRKVFSVKKLKWNFRGNQTMFFDG 234
Query: 386 LVVDMMWDVHDWLF----------------NPNSDSS--------AVFLFRTRSGLDSRL 279
+++DMMWD+HDW + + +S SS AVF+FR RSGLDSRL
Sbjct: 235 MLIDMMWDLHDWFYKETLSSVSTSSSSKTASSSSSSSTSSSTPPCAVFMFRRRSGLDSRL 294
Query: 278 WFEEKNLQT------CKEHERIGFSLLICACK 201
W +E ++ E+ FSL+ICA K
Sbjct: 295 WIDEDEQESEMKKNIGSRDEKHSFSLIICASK 326
>gb|AAM61047.1| unknown [Arabidopsis thaliana]
Length = 327
Score = 143 bits (361), Expect = 2e-33
Identities = 91/213 (42%), Positives = 122/213 (56%), Gaps = 40/213 (18%)
Frame = -1
Query: 719 FYVVVLVDSELGLRLGDKDDEIDETLDLSIMKGNFSMVSRSERFSGTTVYATRAKFSESG 540
F+VVV+V+SE+ L +GD D E D + S VS++ERFSGT T+A+FS+ G
Sbjct: 121 FFVVVVVNSEITLGVGDVDHERDTSSSSSWR------VSKTERFSGTCWLTTKAQFSDVG 174
Query: 539 DFHDILIRCVAE-----EEG----LKMNHVLSVCLDKKTVFQVKRLRWNFRGNQTIFVDG 387
H+I I+C EEG +K +SV +DK+ VF VK+L+WNFRGNQT+F DG
Sbjct: 175 RKHEIQIQCGGGGGGGGEEGYLWKVKSPETMSVYVDKRKVFSVKKLKWNFRGNQTMFFDG 234
Query: 386 LVVDMMWDVHDWLF----------------NPNSDSS--------AVFLFRTRSGLDSRL 279
+++DMMWD+HDW + + +S SS AVF+FR RSG DSRL
Sbjct: 235 MLIDMMWDLHDWFYKETLSSVSTSSSSKTASSSSSSSTSSSTPPCAVFMFRRRSGFDSRL 294
Query: 278 WFEEKNLQTCKEHERIG-------FSLLICACK 201
W +E Q K + IG FSL+ICA K
Sbjct: 295 WIDEDE-QESKMKKNIGSRDEKHSFSLIICASK 326
>ref|NP_198167.1| putative protein; protein id: At5g28150.1, supported by cDNA:
gi_19699076 [Arabidopsis thaliana]
gi|19699077|gb|AAL90906.1| AT5g28150/T24G3_80
[Arabidopsis thaliana] gi|23308357|gb|AAN18148.1|
At5g28150/T24G3_80 [Arabidopsis thaliana]
Length = 289
Score = 122 bits (306), Expect = 5e-27
Identities = 68/176 (38%), Positives = 97/176 (54%)
Frame = -1
Query: 725 GEFYVVVLVDSELGLRLGDKDDEIDETLDLSIMKGNFSMVSRSERFSGTTVYATRAKFSE 546
G FYV V+VD E+ L LGD E + + S +++ E G V+AT+A+
Sbjct: 117 GGFYVGVVVDKEMVLLLGDMKKEAFKKTNASPSSLGAVFIAKKEHVFGKRVFATKAQLFA 176
Query: 545 SGDFHDILIRCVAEEEGLKMNHVLSVCLDKKTVFQVKRLRWNFRGNQTIFVDGLVVDMMW 366
G FHD+LI C + L V +D KT+ QVKRL+W FRGN TI V+ + V+++W
Sbjct: 177 DGKFHDLLIECDTNVT----DPCLVVRVDGKTLLQVKRLKWKFRGNDTIVVNKMTVEVLW 232
Query: 365 DVHDWLFNPNSDSSAVFLFRTRSGLDSRLWFEEKNLQTCKEHERIGFSLLICACKN 198
DVH WLF + +AVF+FRT + L F + T + GFSL++ A K+
Sbjct: 233 DVHSWLFGLPTTGNAVFMFRTCQSTEKSLSFSQDVTTTNSKSHSFGFSLILYAWKS 288
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 658,241,311
Number of Sequences: 1393205
Number of extensions: 15168963
Number of successful extensions: 55816
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 49651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55301
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34343566934
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
