Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004774A_C01 KMC004774A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86220.1| contains ESTs AU093915(E1276),AU162319(E60301)~s... 156 2e-37
emb|CAB95829.1| hypothetical protein [Cicer arietinum] 154 8e-37
ref|NP_177360.1| cytosolic factor, putative; protein id: At1g721... 137 1e-31
ref|NP_173669.1| unknown protein; protein id: At1g22530.1 [Arabi... 127 1e-28
ref|NP_177361.1| cytosolic factor, putative; protein id: At1g721... 123 1e-27
>dbj|BAB86220.1| contains ESTs AU093915(E1276),AU162319(E60301)~similar to cytosolic
factor~unknown protein [Oryza sativa (japonica
cultivar-group)] gi|20804751|dbj|BAB92436.1| P0698A10.6
[Oryza sativa (japonica cultivar-group)]
Length = 613
Score = 156 bits (394), Expect = 2e-37
Identities = 70/107 (65%), Positives = 90/107 (83%)
Frame = -3
Query: 580 NDAVTEITVSPAAKHTVEFPVTENGLLSWELRVIGWDVSYGAEFVPSAEGSYTVIIQKAR 401
+DAVTE+T+ P++K TVE PVTEN + WELRV+GW+VSYGAEF P AEG YTVI+QK R
Sbjct: 505 SDAVTELTIKPSSKETVEIPVTENSTIGWELRVLGWEVSYGAEFTPDAEGGYTVIVQKTR 564
Query: 400 KVASSEEPVLCQNYKIGEPGKVVLTIDNQSSKKKKLLYRLKTKPTSD 260
KV ++EEP++ ++K+GEPGK+VLTI+N +SKKKKLLYR K K TS+
Sbjct: 565 KVPANEEPIMKGSFKVGEPGKIVLTINNPASKKKKLLYRSKVKSTSE 611
>emb|CAB95829.1| hypothetical protein [Cicer arietinum]
Length = 482
Score = 154 bits (389), Expect = 8e-37
Identities = 72/106 (67%), Positives = 85/106 (79%)
Frame = -3
Query: 577 DAVTEITVSPAAKHTVEFPVTENGLLSWELRVIGWDVSYGAEFVPSAEGSYTVIIQKARK 398
D TE+T+ PA KH VEFP+ E L WE+RV+GWDVSYGAEFVPSAE YTVI+QK RK
Sbjct: 377 DPATEVTIKPATKHAVEFPIPEKSTLVWEVRVVGWDVSYGAEFVPSAEDGYTVIVQKNRK 436
Query: 397 VASSEEPVLCQNYKIGEPGKVVLTIDNQSSKKKKLLYRLKTKPTSD 260
+A ++E V+ +KIGEPGKVVLTIDNQ+SKKKKLLYR KT P S+
Sbjct: 437 IAPADETVINNTFKIGEPGKVVLTIDNQTSKKKKLLYRSKTIPISE 482
>ref|NP_177360.1| cytosolic factor, putative; protein id: At1g72150.1, supported by
cDNA: gi_15028180, supported by cDNA: gi_21280860
[Arabidopsis thaliana] gi|25406149|pir||H96744 probable
cytosolic factor T9N14.1 [imported] - Arabidopsis
thaliana gi|12323660|gb|AAG51793.1|AC067754_9 cytosolic
factor, putative; 12503-14597 [Arabidopsis thaliana]
gi|15028181|gb|AAK76587.1| putative cytosolic factor
[Arabidopsis thaliana] gi|21280861|gb|AAM44913.1|
putative cytosolic factor protein [Arabidopsis thaliana]
Length = 573
Score = 137 bits (345), Expect = 1e-31
Identities = 61/102 (59%), Positives = 82/102 (79%)
Frame = -3
Query: 577 DAVTEITVSPAAKHTVEFPVTENGLLSWELRVIGWDVSYGAEFVPSAEGSYTVIIQKARK 398
+ +TE V PAA +T+E P +E LSWELRV+G DVSYGA+F P+ EGSY VI+ K RK
Sbjct: 472 ETITEAIVKPAANYTIELPASEACTLSWELRVLGADVSYGAQFEPTTEGSYAVIVSKTRK 531
Query: 397 VASSEEPVLCQNYKIGEPGKVVLTIDNQSSKKKKLLYRLKTK 272
+ S++EPV+ ++K+GEPGK+V+TIDNQ+SKKKK+LYR KT+
Sbjct: 532 IGSTDEPVITDSFKVGEPGKIVITIDNQTSKKKKVLYRFKTQ 573
>ref|NP_173669.1| unknown protein; protein id: At1g22530.1 [Arabidopsis thaliana]
gi|25511657|pir||E86358 F12K8.13 protein - Arabidopsis
thaliana gi|6587836|gb|AAF18525.1|AC006551_11 Unknown
protein [Arabidopsis thaliana]
gi|20268782|gb|AAM14094.1| unknown protein [Arabidopsis
thaliana] gi|22136800|gb|AAM91744.1| unknown protein
[Arabidopsis thaliana]
Length = 683
Score = 127 bits (319), Expect = 1e-28
Identities = 61/104 (58%), Positives = 77/104 (73%)
Frame = -3
Query: 583 VNDAVTEITVSPAAKHTVEFPVTENGLLSWELRVIGWDVSYGAEFVPSAEGSYTVIIQKA 404
V D VTE V +K+T++ P TE LSWELRV+G DVSYGA+F PS E SYTVI+ K
Sbjct: 579 VEDGVTEAVVKSTSKYTIDLPATEGSTLSWELRVLGADVSYGAQFEPSNEASYTVIVSKN 638
Query: 403 RKVASSEEPVLCQNYKIGEPGKVVLTIDNQSSKKKKLLYRLKTK 272
RKV ++EPV+ ++K E GKVV+TIDNQ+ KKKK+LYR KT+
Sbjct: 639 RKVGLTDEPVITDSFKASEAGKVVITIDNQTFKKKKVLYRSKTQ 682
>ref|NP_177361.1| cytosolic factor, putative; protein id: At1g72160.1, supported by
cDNA: gi_15081613 [Arabidopsis thaliana]
gi|25406150|pir||A96745 probable cytosolic factor
T9N14.8 [imported] - Arabidopsis thaliana
gi|12323663|gb|AAG51796.1|AC067754_12 cytosolic factor,
putative; 19554-17768 [Arabidopsis thaliana]
Length = 490
Score = 123 bits (309), Expect = 1e-27
Identities = 58/105 (55%), Positives = 76/105 (72%)
Frame = -3
Query: 583 VNDAVTEITVSPAAKHTVEFPVTENGLLSWELRVIGWDVSYGAEFVPSAEGSYTVIIQKA 404
+ D+ +EITV P K TVE + E L WE+RV GW+VSY AEFVP + +YTV+IQK
Sbjct: 385 LEDSASEITVKPGTKQTVEIIIYEKCELVWEIRVTGWEVSYKAEFVPEEKDAYTVVIQKP 444
Query: 403 RKVASSEEPVLCQNYKIGEPGKVVLTIDNQSSKKKKLLYRLKTKP 269
RK+ S+EPVL ++K+ E GKV+LT+DN +SKKKKL+YR KP
Sbjct: 445 RKMRPSDEPVLTHSFKVNELGKVLLTVDNPTSKKKKLVYRFNVKP 489
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,658,284
Number of Sequences: 1393205
Number of extensions: 10798841
Number of successful extensions: 38791
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 31928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38323
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
