Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004772A_C01 KMC004772A_c01
(976 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191041.1| GATA zinc finger protein; protein id: At3g54810... 139 7e-32
emb|CAC28528.1| GATA-1 zinc finger protein [Nicotiana tabacum] 139 9e-32
gb|AAF79843.1|AC026875_23 T6D22.9 [Arabidopsis thaliana] 136 4e-31
ref|NP_172279.1| GATA zinc finger protein; protein id: At1g08010... 136 4e-31
gb|AAK98698.1|AC069158_10 Putative GATA-1 zinc finger protein [O... 130 4e-29
>ref|NP_191041.1| GATA zinc finger protein; protein id: At3g54810.1, supported by
cDNA: gi_15724333, supported by cDNA: gi_18700239
[Arabidopsis thaliana] gi|7486339|pir||T06739
hypothetical protein F28P10.210 - Arabidopsis thaliana
gi|4678312|emb|CAB41103.1| putative protein [Arabidopsis
thaliana] gi|15724334|gb|AAL06560.1|AF412107_1
AT3g54810/F28P10_210 [Arabidopsis thaliana]
gi|18700240|gb|AAL77730.1| AT3g54810/F28P10_210
[Arabidopsis thaliana]
Length = 322
Score = 139 bits (350), Expect = 7e-32
Identities = 69/110 (62%), Positives = 79/110 (71%), Gaps = 8/110 (7%)
Frame = -2
Query: 927 DAEKLLNKAKKQRKKDLFMLSDDA--------EMKRFSSQGSAVPRKCMHCEVTKTPQWR 772
D K++NK KK++ K S + +SS+ + RKCMHCEVTKTPQWR
Sbjct: 185 DHNKMINKKKKKKAKITSSSSSSGIDLEVNGNNVDSYSSEQYPL-RKCMHCEVTKTPQWR 243
Query: 771 EGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPAVHSNCHKKVLEMR 622
GPMGPKTLCNACGVRY+SGRLFPEYRPAASPTF PA+HSN HKKV EMR
Sbjct: 244 LGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKKVAEMR 293
>emb|CAC28528.1| GATA-1 zinc finger protein [Nicotiana tabacum]
Length = 305
Score = 139 bits (349), Expect = 9e-32
Identities = 66/105 (62%), Positives = 79/105 (74%)
Frame = -2
Query: 936 ETGDAEKLLNKAKKQRKKDLFMLSDDAEMKRFSSQGSAVPRKCMHCEVTKTPQWREGPMG 757
+T DA K K +K + ++D + K S Q + +KC HC+VTKTPQWREGP+G
Sbjct: 161 KTCDARKGKEKKRKMSLLSVPQIADVTKKKTTSGQQFSF-KKCTHCQVTKTPQWREGPLG 219
Query: 756 PKTLCNACGVRYRSGRLFPEYRPAASPTFVPAVHSNCHKKVLEMR 622
PKTLCNACGVRYRSGRLFPEYRPAASPTFVP +HSN H+KV+EMR
Sbjct: 220 PKTLCNACGVRYRSGRLFPEYRPAASPTFVPTLHSNSHRKVVEMR 264
>gb|AAF79843.1|AC026875_23 T6D22.9 [Arabidopsis thaliana]
Length = 821
Score = 136 bits (343), Expect = 4e-31
Identities = 65/106 (61%), Positives = 79/106 (74%)
Frame = -2
Query: 903 AKKQRKKDLFMLSDDAEMKRFSSQGSAVPRKCMHCEVTKTPQWREGPMGPKTLCNACGVR 724
AKK+RK L + + ++ +S G + RKC HCE TKTPQWREGP GPKTLCNACGVR
Sbjct: 268 AKKKRKIHLTTRTVSSTLEASNSDG--IVRKCTHCETTKTPQWREGPSGPKTLCNACGVR 325
Query: 723 YRSGRLFPEYRPAASPTFVPAVHSNCHKKVLEMRGAI*EAVRGSML 586
+RSGRL PEYRPA+SPTF+PAVHSN H+K++EMR E SM+
Sbjct: 326 FRSGRLVPEYRPASSPTFIPAVHSNSHRKIIEMRRKDDEQFDSSMI 371
Score = 127 bits (319), Expect = 3e-28
Identities = 56/94 (59%), Positives = 73/94 (77%)
Frame = -2
Query: 903 AKKQRKKDLFMLSDDAEMKRFSSQGSAVPRKCMHCEVTKTPQWREGPMGPKTLCNACGVR 724
AKK+RK L ++ + ++ SS+ + R C HCE TPQWR+GP GPKTLCNACGVR
Sbjct: 704 AKKKRKIHLITHTESSTLE--SSKSDGIVRICTHCETITTPQWRQGPSGPKTLCNACGVR 761
Query: 723 YRSGRLFPEYRPAASPTFVPAVHSNCHKKVLEMR 622
++SGRL PEYRPA+SPTF+P+VHSN H+K++EMR
Sbjct: 762 FKSGRLVPEYRPASSPTFIPSVHSNSHRKIIEMR 795
>ref|NP_172279.1| GATA zinc finger protein; protein id: At1g08010.1 [Arabidopsis
thaliana]
Length = 303
Score = 136 bits (343), Expect = 4e-31
Identities = 65/106 (61%), Positives = 79/106 (74%)
Frame = -2
Query: 903 AKKQRKKDLFMLSDDAEMKRFSSQGSAVPRKCMHCEVTKTPQWREGPMGPKTLCNACGVR 724
AKK+RK L + + ++ +S G + RKC HCE TKTPQWREGP GPKTLCNACGVR
Sbjct: 193 AKKKRKIHLTTRTVSSTLEASNSDG--IVRKCTHCETTKTPQWREGPSGPKTLCNACGVR 250
Query: 723 YRSGRLFPEYRPAASPTFVPAVHSNCHKKVLEMRGAI*EAVRGSML 586
+RSGRL PEYRPA+SPTF+PAVHSN H+K++EMR E SM+
Sbjct: 251 FRSGRLVPEYRPASSPTFIPAVHSNSHRKIIEMRRKDDEQFDSSMI 296
>gb|AAK98698.1|AC069158_10 Putative GATA-1 zinc finger protein [Oryza sativa]
Length = 418
Score = 130 bits (326), Expect = 4e-29
Identities = 64/120 (53%), Positives = 80/120 (66%), Gaps = 11/120 (9%)
Frame = -2
Query: 948 ESDLETGDAEKLLNKAKKQRKKDLFMLSDDAEMKRFSSQGS-------AVP----RKCMH 802
ES E+ + K KK +K + DAE ++ A+P R+C H
Sbjct: 278 ESIAESNPHPPPMKKKKKAKKPAAPAAASDAEADADAADADYEEGGALALPPGTVRRCTH 337
Query: 801 CEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPAVHSNCHKKVLEMR 622
C++ KTPQWR GP+GPKTLCNACGVRY+SGRLFPEYRPAASPTF+P++HSN HKKV+EMR
Sbjct: 338 CQIEKTPQWRAGPLGPKTLCNACGVRYKSGRLFPEYRPAASPTFMPSIHSNSHKKVVEMR 397
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 817,882,243
Number of Sequences: 1393205
Number of extensions: 18254122
Number of successful extensions: 37283
Number of sequences better than 10.0: 237
Number of HSP's better than 10.0 without gapping: 35468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37146
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 55742331432
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
