Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004771A_C01 KMC004771A_c01
(763 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182216.1| pectinacetylesterase, putative; protein id: At2... 111 1e-37
ref|NP_198019.2| pectinacetylesterase, putative; protein id: At5... 111 3e-37
pir||T01197 pectin acetylesterase homolog F21E10.11 - Arabidopsi... 111 3e-37
ref|NP_191765.1| pectinacetylesterase family; protein id: At3g62... 115 8e-37
gb|AAO41919.1| putative pectinacetylesterase [Arabidopsis thalia... 115 8e-37
>ref|NP_182216.1| pectinacetylesterase, putative; protein id: At2g46930.1, supported
by cDNA: gi_15450606 [Arabidopsis thaliana]
gi|7487999|pir||T02194 probable pectinacetylesterase
At2g46930 - Arabidopsis thaliana
gi|3522956|gb|AAC34238.1| putative pectinesterase
[Arabidopsis thaliana] gi|15450607|gb|AAK96575.1|
At2g46930/F14M4.24 [Arabidopsis thaliana]
Length = 416
Score = 111 bits (278), Expect(2) = 1e-37
Identities = 49/75 (65%), Positives = 59/75 (78%)
Frame = -3
Query: 761 PSADPHGSWTACKLNHAKCNSSQIQFFQDFRNAMVNDVRDFSRTPPTGLFINSCFSHCQS 582
PS D GSW ACK +H+ CNSSQIQFFQDFR MV+ V+ F+ + G+FINSCF+HCQS
Sbjct: 305 PSVDLSGSWKACKSDHSHCNSSQIQFFQDFRTHMVDAVKSFATSTHNGVFINSCFAHCQS 364
Query: 581 ERQDTWFADDSPLLN 537
ERQDTW+A DSP L+
Sbjct: 365 ERQDTWYAPDSPTLH 379
Score = 67.8 bits (164), Expect(2) = 1e-37
Identities = 30/43 (69%), Positives = 33/43 (75%)
Frame = -1
Query: 553 TLHFLTRCPVAVAVGNWYFDRQAVKEIDCPYPCDNTCHNLVFK 425
TLH T VA +VG+WYFDR VK IDCPYPCD TCHNL+FK
Sbjct: 377 TLHGKT---VAESVGDWYFDRTTVKAIDCPYPCDKTCHNLIFK 416
>ref|NP_198019.2| pectinacetylesterase, putative; protein id: At5g26665.1
[Arabidopsis thaliana]
Length = 423
Score = 111 bits (278), Expect(2) = 3e-37
Identities = 47/76 (61%), Positives = 58/76 (75%)
Frame = -3
Query: 761 PSADPHGSWTACKLNHAKCNSSQIQFFQDFRNAMVNDVRDFSRTPPTGLFINSCFSHCQS 582
PSADP G W C+LNH +C +QI+F Q FRN M+ V FS + GLFINSCF+HCQ+
Sbjct: 312 PSADPSGYWHECRLNHGRCTPAQIRFLQGFRNQMLRAVSGFSNSKKNGLFINSCFAHCQT 371
Query: 581 ERQDTWFADDSPLLNK 534
ERQDTWFADDSP+++K
Sbjct: 372 ERQDTWFADDSPVIHK 387
Score = 66.2 bits (160), Expect(2) = 3e-37
Identities = 26/34 (76%), Positives = 30/34 (87%)
Frame = -1
Query: 526 VAVAVGNWYFDRQAVKEIDCPYPCDNTCHNLVFK 425
VA+AVG+WYFDR VK IDCPYPCD +CHNLVF+
Sbjct: 390 VAIAVGDWYFDRAEVKLIDCPYPCDRSCHNLVFR 423
>pir||T01197 pectin acetylesterase homolog F21E10.11 - Arabidopsis thaliana
gi|3047082|gb|AAC13595.1| similar to Vigna radiata
pectinacetylesterase precursor (GB:X99348) [Arabidopsis
thaliana]
Length = 422
Score = 111 bits (278), Expect(2) = 3e-37
Identities = 47/76 (61%), Positives = 58/76 (75%)
Frame = -3
Query: 761 PSADPHGSWTACKLNHAKCNSSQIQFFQDFRNAMVNDVRDFSRTPPTGLFINSCFSHCQS 582
PSADP G W C+LNH +C +QI+F Q FRN M+ V FS + GLFINSCF+HCQ+
Sbjct: 311 PSADPSGYWHECRLNHGRCTPAQIRFLQGFRNQMLRAVSGFSNSKKNGLFINSCFAHCQT 370
Query: 581 ERQDTWFADDSPLLNK 534
ERQDTWFADDSP+++K
Sbjct: 371 ERQDTWFADDSPVIHK 386
Score = 66.2 bits (160), Expect(2) = 3e-37
Identities = 26/34 (76%), Positives = 30/34 (87%)
Frame = -1
Query: 526 VAVAVGNWYFDRQAVKEIDCPYPCDNTCHNLVFK 425
VA+AVG+WYFDR VK IDCPYPCD +CHNLVF+
Sbjct: 389 VAIAVGDWYFDRAEVKLIDCPYPCDRSCHNLVFR 422
>ref|NP_191765.1| pectinacetylesterase family; protein id: At3g62060.1 [Arabidopsis
thaliana] gi|11281560|pir||T47998
pectinacetylesterase-like protein T17J13.20 [imported] -
Arabidopsis thaliana gi|6899916|emb|CAB71866.1|
pectinacetylesterase precursor-like protein [Arabidopsis
thaliana]
Length = 420
Score = 115 bits (289), Expect(2) = 8e-37
Identities = 50/75 (66%), Positives = 60/75 (79%)
Frame = -3
Query: 761 PSADPHGSWTACKLNHAKCNSSQIQFFQDFRNAMVNDVRDFSRTPPTGLFINSCFSHCQS 582
P+ADP G W ACK +H++CNSSQIQFFQ+FRN M+ V FS + GL+INSCF+HCQ+
Sbjct: 308 PTADPGGIWKACKSDHSRCNSSQIQFFQEFRNQMLFAVNSFSNSDQNGLYINSCFAHCQT 367
Query: 581 ERQDTWFADDSPLLN 537
ERQDTWFA DSP LN
Sbjct: 368 ERQDTWFAQDSPQLN 382
Score = 60.5 bits (145), Expect(2) = 8e-37
Identities = 25/35 (71%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Frame = -1
Query: 526 VAVAVGNWYFDR-QAVKEIDCPYPCDNTCHNLVFK 425
VA +VG+WYFDR + VK IDCPYPCD TCHNL+F+
Sbjct: 386 VAESVGDWYFDRAKNVKAIDCPYPCDTTCHNLIFE 420
>gb|AAO41919.1| putative pectinacetylesterase [Arabidopsis thaliana]
gi|28827554|gb|AAO50621.1| putative pectinacetylesterase
[Arabidopsis thaliana]
Length = 419
Score = 115 bits (289), Expect(2) = 8e-37
Identities = 50/75 (66%), Positives = 60/75 (79%)
Frame = -3
Query: 761 PSADPHGSWTACKLNHAKCNSSQIQFFQDFRNAMVNDVRDFSRTPPTGLFINSCFSHCQS 582
P+ADP G W ACK +H++CNSSQIQFFQ+FRN M+ V FS + GL+INSCF+HCQ+
Sbjct: 307 PTADPGGIWKACKSDHSRCNSSQIQFFQEFRNQMLFAVNSFSNSDQNGLYINSCFAHCQT 366
Query: 581 ERQDTWFADDSPLLN 537
ERQDTWFA DSP LN
Sbjct: 367 ERQDTWFAQDSPQLN 381
Score = 60.5 bits (145), Expect(2) = 8e-37
Identities = 25/35 (71%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Frame = -1
Query: 526 VAVAVGNWYFDR-QAVKEIDCPYPCDNTCHNLVFK 425
VA +VG+WYFDR + VK IDCPYPCD TCHNL+F+
Sbjct: 385 VAESVGDWYFDRAKNVKAIDCPYPCDTTCHNLIFE 419
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 620,379,444
Number of Sequences: 1393205
Number of extensions: 12552973
Number of successful extensions: 23573
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 22934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23564
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 36974710344
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
