Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004768A_C01 KMC004768A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_569028.1| expressed protein; protein id: At5g66090.1, sup... 39 8e-06
dbj|BAC43328.1| unknown protein [Arabidopsis thaliana] 39 8e-06
ref|ZP_00116465.1| hypothetical protein [Synechococcus sp. WH 8102] 35 0.61
gb|ZP_00114318.1| hypothetical protein [Prochlorococcus marinus ... 35 0.79
ref|NP_566905.1| expressed protein; protein id: At3g48450.1, sup... 34 1.3
>ref|NP_569028.1| expressed protein; protein id: At5g66090.1, supported by cDNA:
124621. [Arabidopsis thaliana]
gi|10177124|dbj|BAB10414.1| gene_id:K2A18.17~unknown
protein [Arabidopsis thaliana]
gi|21537237|gb|AAM61578.1| unknown [Arabidopsis
thaliana]
Length = 210
Score = 38.5 bits (88), Expect(2) = 8e-06
Identities = 19/32 (59%), Positives = 26/32 (80%), Gaps = 2/32 (6%)
Frame = -2
Query: 217 YTLLERLGEGSEPTA--GDVADELNLDLIVIS 128
+ LLERLGEG + TA G+VADEL ++L+V+S
Sbjct: 152 FKLLERLGEGKKATAIIGEVADELKMELVVMS 183
Score = 32.3 bits (72), Expect(2) = 8e-06
Identities = 13/25 (52%), Positives = 21/25 (84%), Gaps = 2/25 (8%)
Frame = -3
Query: 135 LLALETIHTQHIDANLLV--VPCPV 67
++++E IH+++IDANLL +PCPV
Sbjct: 181 VMSMEAIHSKYIDANLLAEFIPCPV 205
>dbj|BAC43328.1| unknown protein [Arabidopsis thaliana]
Length = 210
Score = 38.5 bits (88), Expect(2) = 8e-06
Identities = 19/32 (59%), Positives = 26/32 (80%), Gaps = 2/32 (6%)
Frame = -2
Query: 217 YTLLERLGEGSEPTA--GDVADELNLDLIVIS 128
+ LLERLGEG + TA G+VADEL ++L+V+S
Sbjct: 152 FKLLERLGEGKKATAIIGEVADELKMELVVMS 183
Score = 32.3 bits (72), Expect(2) = 8e-06
Identities = 13/25 (52%), Positives = 21/25 (84%), Gaps = 2/25 (8%)
Frame = -3
Query: 135 LLALETIHTQHIDANLLV--VPCPV 67
++++E IH+++IDANLL +PCPV
Sbjct: 181 VMSMEAIHSKYIDANLLAEFIPCPV 205
>ref|ZP_00116465.1| hypothetical protein [Synechococcus sp. WH 8102]
Length = 119
Score = 35.0 bits (79), Expect = 0.61
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 9/53 (16%)
Frame = -2
Query: 205 ERLGEGSEPTAG--DVADELNLDLIVISTG------NNSYTAYR-CKFACCPL 74
+RL G EP DVADELN+D+IV+ TG N+ TA R + A CP+
Sbjct: 63 QRLERGGEPLTVILDVADELNVDVIVMGTGGVSLNSNDGSTAARVIELAPCPV 115
>gb|ZP_00114318.1| hypothetical protein [Prochlorococcus marinus str. MIT 9313]
Length = 127
Score = 34.7 bits (78), Expect = 0.79
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Frame = -2
Query: 265 MLLGGLHEKVY*SGMSYTLLERLGEGSEPTAGDVADELNLDLIVIST------GNNSYTA 104
+LL E+V +G++ +LER G+ + DVADELN+D+IV+ T G++ TA
Sbjct: 54 VLLKRAREQVKQAGIACEVLEREGKPAFVIC-DVADELNVDVIVMGTRGVNLDGDSESTA 112
Query: 103 YR-CKFACCPL 74
R + A CP+
Sbjct: 113 ARVIQLAPCPV 123
>ref|NP_566905.1| expressed protein; protein id: At3g48450.1, supported by cDNA:
264020. [Arabidopsis thaliana]
gi|21554778|gb|AAM63688.1| unknown [Arabidopsis
thaliana]
Length = 89
Score = 33.9 bits (76), Expect = 1.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 410 PKSKNPHHHSRHTRKSKKPQQDQK 481
PK+ N HHH+ HTR S+ P+ +K
Sbjct: 61 PKNNNNHHHNHHTRHSQTPRSKKK 84
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,567,936
Number of Sequences: 1393205
Number of extensions: 12259917
Number of successful extensions: 33268
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 31320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33149
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
