Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004767A_C01 KMC004767A_c01
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S55059 fertilin alpha-I - crab-eating macaque gi|794073|emb... 35 1.0
gb|AAK98773.1| vomeronasal receptor V1RD19 [Mus musculus] 34 1.7
dbj|BAB79207.1| vomeronasal receptor 1 C2 [Mus musculus] gi|2745... 34 1.7
gb|AAL47902.1| vomeronasal receptor V1RD18 [Mus musculus] 34 1.7
gb|EAA17496.1| hypothetical protein [Plasmodium yoelii yoelii] 33 2.2
>pir||S55059 fertilin alpha-I - crab-eating macaque gi|794073|emb|CAA56203.1|
fertilin alpha-I [Macaca fascicularis]
gi|1841702|emb|CAA70487.1| fertilin alpha-I isoform
[Macaca fascicularis]
Length = 905
Score = 34.7 bits (78), Expect = 1.0
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = -3
Query: 401 LLLVLFYIYLNYCHLMCTWWSLLNLILFLSLPTRGGNSTISKLSPLLCFQ 252
LLL++ ++ +CHL ++S +I+ L +GG+S++ LS LL Q
Sbjct: 57 LLLLVIFVPSMHCHLGSIYYSFYEIIIPKRLTVQGGDSSVEGLSYLLFMQ 106
>gb|AAK98773.1| vomeronasal receptor V1RD19 [Mus musculus]
Length = 289
Score = 33.9 bits (76), Expect = 1.7
Identities = 22/72 (30%), Positives = 34/72 (46%), Gaps = 5/72 (6%)
Frame = -3
Query: 560 LRI*ICSSCSLVLPPHSTCVAMPVIELLPSDMRDCAEISSIYPLSARLADF-----FSLL 396
+ I + +S S+VL H C M I L D R AE ++ + + + F SL+
Sbjct: 197 MSIMVWTSVSMVLLLHRHCQRMQYIFTLNQDPRGQAETTATHTILMLVVTFVGFYLLSLI 256
Query: 395 LVLFYIYLNYCH 360
++FY Y Y H
Sbjct: 257 CIIFYTYFIYSH 268
>dbj|BAB79207.1| vomeronasal receptor 1 C2 [Mus musculus] gi|27451594|gb|AAO14992.1|
vomeronasal receptor V1RD19 [Mus musculus]
Length = 305
Score = 33.9 bits (76), Expect = 1.7
Identities = 22/72 (30%), Positives = 34/72 (46%), Gaps = 5/72 (6%)
Frame = -3
Query: 560 LRI*ICSSCSLVLPPHSTCVAMPVIELLPSDMRDCAEISSIYPLSARLADF-----FSLL 396
+ I + +S S+VL H C M I L D R AE ++ + + + F SL+
Sbjct: 197 MSIMVWTSVSMVLLLHRHCQRMQYIFTLNQDPRGQAETTATHTILMLVVTFVGFYLLSLI 256
Query: 395 LVLFYIYLNYCH 360
++FY Y Y H
Sbjct: 257 CIIFYTYFIYSH 268
>gb|AAL47902.1| vomeronasal receptor V1RD18 [Mus musculus]
Length = 305
Score = 33.9 bits (76), Expect = 1.7
Identities = 22/72 (30%), Positives = 34/72 (46%), Gaps = 5/72 (6%)
Frame = -3
Query: 560 LRI*ICSSCSLVLPPHSTCVAMPVIELLPSDMRDCAEISSIYPLSARLADF-----FSLL 396
+ I + +S S+VL H C M I L D R AE ++ + + + F SL+
Sbjct: 197 MSIMVWTSVSMVLLLHRHCQRMQYIFTLNQDPRGQAETTATHTILMLVVTFVGFYLLSLI 256
Query: 395 LVLFYIYLNYCH 360
++FY Y Y H
Sbjct: 257 CIIFYTYFIYSH 268
>gb|EAA17496.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1261
Score = 33.5 bits (75), Expect = 2.2
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = -3
Query: 461 DCAEISSIYPLSARLADFFSLLLVLFYIYLNYCHLMCTWWSLLNLILFLSL 309
+C +SSIY + FF+ L +F +L +L ++SL+NL+LFL +
Sbjct: 247 NCTHLSSIYSKNL----FFNFFLPIFNNFLKNNNLYVFYYSLINLLLFLCI 293
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,178,582
Number of Sequences: 1393205
Number of extensions: 10026990
Number of successful extensions: 25137
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25121
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
