Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004764A_C01 KMC004764A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199633.1| indole-3-glycerol phosphate synthase; protein i... 207 1e-52
dbj|BAC42166.1| putative indole-3-glycerol phosphate synthase [A... 189 3e-47
gb|AAM64536.1| putative indole-3-glycerol phosphate synthase [Ar... 189 3e-47
ref|NP_178521.1| putative indole-3-glycerol phosphate synthase; ... 189 3e-47
gb|AAA60380.1| indole-3-glycerol phosphate synthase 184 9e-46
>ref|NP_199633.1| indole-3-glycerol phosphate synthase; protein id: At5g48220.1,
supported by cDNA: gi_15215597, supported by cDNA:
gi_15529197, supported by cDNA: gi_16974370 [Arabidopsis
thaliana] gi|8777412|dbj|BAA97002.1| indole-3-glycerol
phosphate synthase [Arabidopsis thaliana]
gi|15215598|gb|AAK91344.1| AT5g48220/MIF21_11
[Arabidopsis thaliana] gi|15529198|gb|AAK97693.1|
AT5g48220/MIF21_11 [Arabidopsis thaliana]
gi|16974371|gb|AAL31111.1| AT5g48220/MIF21_11
[Arabidopsis thaliana]
Length = 379
Score = 207 bits (526), Expect = 1e-52
Identities = 100/121 (82%), Positives = 113/121 (92%)
Frame = -3
Query: 583 IKYMLKICRLLGLTALVEVHDEREFDRVLGIEGVELIGINNRNLETFEVDISITKKLLEG 404
IKYM+KIC++LG+ LVEVHDERE DRVL IEGVELIGINNRNLETFEVD+ ITKKLLEG
Sbjct: 258 IKYMIKICKILGMATLVEVHDEREMDRVLAIEGVELIGINNRNLETFEVDLGITKKLLEG 317
Query: 403 ERGKTIREKDIIIVGESGLFTPEDIAYVQEAGVKAVLVGESLVKQSDPGKGISNLFGKDI 224
ERG+ IR+KDI++VGESGLFTPEDIA+VQEAGVKAVLVGESL+KQSDPGK IS LFG+D+
Sbjct: 318 ERGELIRQKDILVVGESGLFTPEDIAFVQEAGVKAVLVGESLIKQSDPGKAISTLFGRDV 377
Query: 223 S 221
S
Sbjct: 378 S 378
>dbj|BAC42166.1| putative indole-3-glycerol phosphate synthase [Arabidopsis
thaliana]
Length = 259
Score = 189 bits (479), Expect = 3e-47
Identities = 93/121 (76%), Positives = 109/121 (89%)
Frame = -3
Query: 583 IKYMLKICRLLGLTALVEVHDEREFDRVLGIEGVELIGINNRNLETFEVDISITKKLLEG 404
I ++LKIC+ L L ALVEVHDERE RVLGIEG+EL+GINNR+LETFEVDIS TKKLLEG
Sbjct: 137 ITFLLKICKKLSLAALVEVHDEREMGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEG 196
Query: 403 ERGKTIREKDIIIVGESGLFTPEDIAYVQEAGVKAVLVGESLVKQSDPGKGISNLFGKDI 224
E G+ IRE+D+I+VGESGLFTP+DIAYVQ AGVKAVLVGES+VKQ+DP KGI+ LFG++I
Sbjct: 197 EHGRQIRERDMIVVGESGLFTPDDIAYVQAAGVKAVLVGESIVKQNDPEKGIAGLFGRNI 256
Query: 223 S 221
S
Sbjct: 257 S 257
>gb|AAM64536.1| putative indole-3-glycerol phosphate synthase [Arabidopsis
thaliana]
Length = 402
Score = 189 bits (479), Expect = 3e-47
Identities = 93/121 (76%), Positives = 109/121 (89%)
Frame = -3
Query: 583 IKYMLKICRLLGLTALVEVHDEREFDRVLGIEGVELIGINNRNLETFEVDISITKKLLEG 404
I ++LKIC+ L L ALVEVHDERE RVLGIEG+EL+GINNR+LETFEVDIS TKKLLEG
Sbjct: 280 ITFLLKICKKLSLAALVEVHDEREMGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEG 339
Query: 403 ERGKTIREKDIIIVGESGLFTPEDIAYVQEAGVKAVLVGESLVKQSDPGKGISNLFGKDI 224
E G+ IRE+D+I+VGESGLFTP+DIAYVQ AGVKAVLVGES+VKQ+DP KGI+ LFG++I
Sbjct: 340 EHGRQIRERDMIVVGESGLFTPDDIAYVQAAGVKAVLVGESIVKQNDPEKGIAGLFGRNI 399
Query: 223 S 221
S
Sbjct: 400 S 400
>ref|NP_178521.1| putative indole-3-glycerol phosphate synthase; protein id:
At2g04400.1, supported by cDNA: 3006. [Arabidopsis
thaliana] gi|27735264|sp|P49572|TRPC_ARATH
Indole-3-glycerol phosphate synthase, chloroplast
precursor (IGPS) gi|25291423|pir||B84457 probable
indole-3-glycerol phosphate synthase [imported] -
Arabidopsis thaliana gi|4587610|gb|AAD25838.1| putative
indole-3-glycerol phosphate synthase [Arabidopsis
thaliana]
Length = 402
Score = 189 bits (479), Expect = 3e-47
Identities = 93/121 (76%), Positives = 109/121 (89%)
Frame = -3
Query: 583 IKYMLKICRLLGLTALVEVHDEREFDRVLGIEGVELIGINNRNLETFEVDISITKKLLEG 404
I ++LKIC+ L L ALVEVHDERE RVLGIEG+EL+GINNR+LETFEVDIS TKKLLEG
Sbjct: 280 ITFLLKICKKLSLAALVEVHDEREMGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEG 339
Query: 403 ERGKTIREKDIIIVGESGLFTPEDIAYVQEAGVKAVLVGESLVKQSDPGKGISNLFGKDI 224
E G+ IRE+D+I+VGESGLFTP+DIAYVQ AGVKAVLVGES+VKQ+DP KGI+ LFG++I
Sbjct: 340 EHGRQIRERDMIVVGESGLFTPDDIAYVQAAGVKAVLVGESIVKQNDPEKGIAGLFGRNI 399
Query: 223 S 221
S
Sbjct: 400 S 400
>gb|AAA60380.1| indole-3-glycerol phosphate synthase
Length = 368
Score = 184 bits (466), Expect = 9e-46
Identities = 93/123 (75%), Positives = 109/123 (88%), Gaps = 2/123 (1%)
Frame = -3
Query: 583 IKYMLKICRLLGLTALVEVHDEREFDRVLGIEGVELIGINNRNLETFEVDISITKKLL-- 410
I ++LKIC+ L L ALVEVHDERE RVLGIEG+EL+GINNR+LETFEVDIS TKKLL
Sbjct: 244 ITFLLKICKKLSLAALVEVHDEREMGRVLGIEGIELVGINNRSLETFEVDISNTKKLLAL 303
Query: 409 EGERGKTIREKDIIIVGESGLFTPEDIAYVQEAGVKAVLVGESLVKQSDPGKGISNLFGK 230
EGE G+ IRE+D+I+VGESGLFTP+DIAYVQ AGVKAVLVGES+VKQ+DP KGI+ LFG+
Sbjct: 304 EGEHGRQIRERDMIVVGESGLFTPDDIAYVQAAGVKAVLVGESIVKQNDPEKGIAGLFGR 363
Query: 229 DIS 221
+IS
Sbjct: 364 NIS 366
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,587,676
Number of Sequences: 1393205
Number of extensions: 9977806
Number of successful extensions: 31256
Number of sequences better than 10.0: 395
Number of HSP's better than 10.0 without gapping: 29272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30862
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
