Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004760A_C01 KMC004760A_c01
(406 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567817.1| expressed protein; protein id: At4g28740.1, sup... 109 9e-24
gb|AAK82486.1| AT4g28740/F16A16_150 [Arabidopsis thaliana] gi|20... 109 9e-24
pir||T04525 hypothetical protein F16A16.150 - Arabidopsis thalia... 109 9e-24
ref|NP_171790.1| hypothetical protein; protein id: At1g02910.1 [... 43 0.001
pir||T28657 blackjack protein, microtubule associated - American... 37 0.045
>ref|NP_567817.1| expressed protein; protein id: At4g28740.1, supported by cDNA:
36080., supported by cDNA: gi_15081661, supported by
cDNA: gi_20147174 [Arabidopsis thaliana]
Length = 347
Score = 109 bits (272), Expect = 9e-24
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = -3
Query: 404 KLAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGMWTGLLDGFDGRV 237
KLA VSS+SPVYLSLRLDGRVR SGVGYPPW AFVAQLPPVKGMWTGLLDG DGRV
Sbjct: 292 KLANVSSDSPVYLSLRLDGRVRASGVGYPPWQAFVAQLPPVKGMWTGLLDGMDGRV 347
>gb|AAK82486.1| AT4g28740/F16A16_150 [Arabidopsis thaliana]
gi|20147175|gb|AAM10304.1| AT4g28740/F16A16_150
[Arabidopsis thaliana]
Length = 347
Score = 109 bits (272), Expect = 9e-24
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = -3
Query: 404 KLAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGMWTGLLDGFDGRV 237
KLA VSS+SPVYLSLRLDGRVR SGVGYPPW AFVAQLPPVKGMWTGLLDG DGRV
Sbjct: 292 KLANVSSDSPVYLSLRLDGRVRASGVGYPPWQAFVAQLPPVKGMWTGLLDGMDGRV 347
>pir||T04525 hypothetical protein F16A16.150 - Arabidopsis thaliana
gi|4218124|emb|CAA22978.1| hypothetical protein
[Arabidopsis thaliana] gi|7269729|emb|CAB81462.1|
hypothetical protein [Arabidopsis thaliana]
gi|21593096|gb|AAM65045.1| unknown [Arabidopsis
thaliana]
Length = 331
Score = 109 bits (272), Expect = 9e-24
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = -3
Query: 404 KLAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGMWTGLLDGFDGRV 237
KLA VSS+SPVYLSLRLDGRVR SGVGYPPW AFVAQLPPVKGMWTGLLDG DGRV
Sbjct: 276 KLANVSSDSPVYLSLRLDGRVRASGVGYPPWQAFVAQLPPVKGMWTGLLDGMDGRV 331
>ref|NP_171790.1| hypothetical protein; protein id: At1g02910.1 [Arabidopsis
thaliana] gi|25518542|pir||E86159 hypothetical protein
F22D16.9 - Arabidopsis thaliana
gi|6056411|gb|AAF02875.1|AC009525_9 Hypothetical protein
[Arabidopsis thaliana]
Length = 453
Score = 42.7 bits (99), Expect = 0.001
Identities = 20/38 (52%), Positives = 24/38 (62%)
Frame = -3
Query: 395 GVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPV 282
GV+ VY+ LRLDGRVR SG G P W +LPP+
Sbjct: 407 GVNPGDDVYIILRLDGRVRRSGRGMPDWAEISKELPPM 444
>pir||T28657 blackjack protein, microtubule associated - American bird
grasshopper gi|1220511|gb|AAC37266.1| blackjack
[Schistocerca americana]
Length = 1547
Score = 37.4 bits (85), Expect = 0.045
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 7/41 (17%)
Frame = +2
Query: 302 RKHSKEDNQHHCHEHDH-------PDVEIDTRETQRTHPPT 403
R H + D QHH HEH+H P+ +D E QR PT
Sbjct: 16 RGHERRDQQHHQHEHEHDQDDDLGPETSVDDGELQRHSCPT 56
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 349,609,962
Number of Sequences: 1393205
Number of extensions: 7085900
Number of successful extensions: 27750
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 24961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27102
length of database: 448,689,247
effective HSP length: 110
effective length of database: 295,436,697
effective search space used: 7090480728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
