Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004757A_C01 KMC004757A_c01
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN38066.1| oligomycin sensitivity conferring protein [Silene... 117 9e-26
gb|AAN38067.1| oligomycin sensitivity conferring protein [Silene... 116 3e-25
sp|P22778|ATPO_IPOBA ATP synthase delta chain, mitochondrial pre... 110 1e-23
ref|NP_196849.1| delta subunit of mitochondrial F1-ATPase; prote... 108 4e-23
gb|AAK55728.1|AF380647_1 AT5g13450/T22N19_100 [Arabidopsis thali... 108 4e-23
>gb|AAN38066.1| oligomycin sensitivity conferring protein [Silene latifolia]
Length = 230
Score = 117 bits (294), Expect = 9e-26
Identities = 56/80 (70%), Positives = 70/80 (87%)
Frame = -2
Query: 606 AEVTKNFLVVVAENGRLKNIDTIAKRFGELAMAYKGEVKATVTTVFPLPPEEEKALKETV 427
++V KNFLVV+AENGRL+++D+IAKRF EL MA++GE++ATVTTV PLPP EEK LKET+
Sbjct: 117 SDVMKNFLVVLAENGRLRHVDSIAKRFSELTMAHRGELQATVTTVIPLPPTEEKELKETL 176
Query: 426 QEIIGSGAKVSLEQKIDPSI 367
QEI+G G V LEQKIDP+I
Sbjct: 177 QEILGQGITVKLEQKIDPNI 196
Score = 63.2 bits (152), Expect = 3e-09
Identities = 29/48 (60%), Positives = 38/48 (78%)
Frame = -3
Query: 407 GLRFHLNRRLIQASLGGLVLEFSQKVFDMSIRTRAQQMERILREPINI 264
G+ L +++ LGG+++EF QKVFDMSIRTRA+QMER LREP+NI
Sbjct: 183 GITVKLEQKIDPNILGGIIVEFGQKVFDMSIRTRARQMERFLREPVNI 230
>gb|AAN38067.1| oligomycin sensitivity conferring protein [Silene latifolia]
Length = 230
Score = 116 bits (290), Expect = 3e-25
Identities = 55/80 (68%), Positives = 69/80 (85%)
Frame = -2
Query: 606 AEVTKNFLVVVAENGRLKNIDTIAKRFGELAMAYKGEVKATVTTVFPLPPEEEKALKETV 427
++V KNFLVV+AENGRL+++D+IAKRF EL MA++GE++AT TTV PLPP EEK LKET+
Sbjct: 117 SDVMKNFLVVLAENGRLRHVDSIAKRFSELTMAHRGELQATATTVIPLPPAEEKELKETL 176
Query: 426 QEIIGSGAKVSLEQKIDPSI 367
QEI+G G V LEQKIDP+I
Sbjct: 177 QEILGQGITVKLEQKIDPNI 196
Score = 63.2 bits (152), Expect = 3e-09
Identities = 29/48 (60%), Positives = 38/48 (78%)
Frame = -3
Query: 407 GLRFHLNRRLIQASLGGLVLEFSQKVFDMSIRTRAQQMERILREPINI 264
G+ L +++ LGG+++EF QKVFDMSIRTRA+QMER LREP+NI
Sbjct: 183 GITVKLEQKIDPNILGGIIVEFGQKVFDMSIRTRARQMERFLREPVNI 230
>sp|P22778|ATPO_IPOBA ATP synthase delta chain, mitochondrial precursor (Oligomycin
sensitivity conferral protein) (OSCP)
gi|100471|pir||A35227 H+-transporting two-sector ATPase
(EC 3.6.3.14) delta chain precursor, mitochondrial -
sweet potato gi|168270|gb|AAA33388.1| F-1-ATPase delta
subunit precursor (EC 3.6.1.3)
Length = 244
Score = 110 bits (276), Expect = 1e-23
Identities = 52/79 (65%), Positives = 66/79 (82%)
Frame = -2
Query: 603 EVTKNFLVVVAENGRLKNIDTIAKRFGELAMAYKGEVKATVTTVFPLPPEEEKALKETVQ 424
+ T+NFL+++AENGRLK+ID I KRF EL MA++GEVKATVTTV PLP +EEK LK T+Q
Sbjct: 132 DTTQNFLLILAENGRLKHIDRIVKRFKELTMAHRGEVKATVTTVIPLPADEEKELKATLQ 191
Query: 423 EIIGSGAKVSLEQKIDPSI 367
E++G G V +EQKIDP+I
Sbjct: 192 EMVGQGKSVQIEQKIDPTI 210
Score = 61.2 bits (147), Expect = 1e-08
Identities = 29/47 (61%), Positives = 36/47 (75%)
Frame = -3
Query: 407 GLRFHLNRRLIQASLGGLVLEFSQKVFDMSIRTRAQQMERILREPIN 267
G + +++ LGGLV+EF QKVFDMSIRTRA+QMER LREP+N
Sbjct: 197 GKSVQIEQKIDPTILGGLVVEFGQKVFDMSIRTRARQMERFLREPLN 243
>ref|NP_196849.1| delta subunit of mitochondrial F1-ATPase; protein id: At5g13450.1,
supported by cDNA: gi_14190494, supported by cDNA:
gi_15809743 [Arabidopsis thaliana]
gi|22096334|sp|Q96251|ATPO_ARATH ATP synthase delta
chain, mitochondrial precursor (Oligomycin sensitivity
conferral protein) (OSCP) gi|11266708|pir||T48592 ATP
synthase delta chain, mitochondrial - Arabidopsis
thaliana gi|7543912|emb|CAB87152.1| delta subunit of
mitochondrial F1-ATPase [Arabidopsis thaliana]
Length = 238
Score = 108 bits (271), Expect = 4e-23
Identities = 52/80 (65%), Positives = 66/80 (82%)
Frame = -2
Query: 606 AEVTKNFLVVVAENGRLKNIDTIAKRFGELAMAYKGEVKATVTTVFPLPPEEEKALKETV 427
AE TKNFL ++AENG+LKN+D I K+F +L A++G+VK VTTV PLPP EEK L ET+
Sbjct: 122 AEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVIPLPPAEEKELTETL 181
Query: 426 QEIIGSGAKVSLEQKIDPSI 367
QEIIG+G K+++EQKIDPSI
Sbjct: 182 QEIIGAGKKITVEQKIDPSI 201
Score = 61.6 bits (148), Expect = 8e-09
Identities = 27/51 (52%), Positives = 40/51 (77%)
Frame = -3
Query: 407 GLRFHLNRRLIQASLGGLVLEFSQKVFDMSIRTRAQQMERILREPINISNI 255
G + + +++ + GGL++EF QKV DMSIRTRAQQMER+LREP++ +N+
Sbjct: 188 GKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMERLLREPVDFNNL 238
>gb|AAK55728.1|AF380647_1 AT5g13450/T22N19_100 [Arabidopsis thaliana]
gi|15809744|gb|AAL06800.1| AT5g13450/T22N19_100
[Arabidopsis thaliana]
Length = 238
Score = 108 bits (271), Expect = 4e-23
Identities = 52/80 (65%), Positives = 66/80 (82%)
Frame = -2
Query: 606 AEVTKNFLVVVAENGRLKNIDTIAKRFGELAMAYKGEVKATVTTVFPLPPEEEKALKETV 427
AE TKNFL ++AENG+LKN+D I K+F +L A++G+VK VTTV PLPP EEK L ET+
Sbjct: 122 AEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVIPLPPAEEKELTETL 181
Query: 426 QEIIGSGAKVSLEQKIDPSI 367
QEIIG+G K+++EQKIDPSI
Sbjct: 182 QEIIGAGKKITVEQKIDPSI 201
Score = 61.6 bits (148), Expect = 8e-09
Identities = 27/51 (52%), Positives = 40/51 (77%)
Frame = -3
Query: 407 GLRFHLNRRLIQASLGGLVLEFSQKVFDMSIRTRAQQMERILREPINISNI 255
G + + +++ + GGL++EF QKV DMSIRTRAQQMER+LREP++ +N+
Sbjct: 188 GKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMERLLREPVDFNNL 238
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,268,798
Number of Sequences: 1393205
Number of extensions: 12364372
Number of successful extensions: 29940
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 29137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29926
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
