Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004756A_C01 KMC004756A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK70805.1| leucine-rich repeat resistance protein-like prote... 220 7e-57
dbj|BAB08479.1| leucine-rich repeat disease resistance protein-l... 204 5e-52
ref|NP_200932.1| Cf-5 disease resistance protein - like; protein... 204 5e-52
ref|NP_172844.1| disease resistance protein, putative; protein i... 185 3e-46
pir||B86272 protein F16A14.12 [imported] - Arabidopsis thaliana ... 185 3e-46
>gb|AAK70805.1| leucine-rich repeat resistance protein-like protein [Gossypium
hirsutum]
Length = 328
Score = 220 bits (561), Expect = 7e-57
Identities = 105/123 (85%), Positives = 114/123 (92%)
Frame = -3
Query: 532 HLVGTIRELIRIEGCFPALRNLYLNNNYFTGGMPAQLANLSSLEILYLSYNKMSGVIPSS 353
HLV TIRELIRIEG FP LRNLYLNNNY TGG+PAQLANL++LEILYLSYNKMSG IP++
Sbjct: 206 HLVSTIRELIRIEGGFPVLRNLYLNNNYLTGGIPAQLANLTNLEILYLSYNKMSGAIPTA 265
Query: 352 LAHIPKLTYLYLDHNQFSGRIPEPFYKHSFLKEMYIEGNAFRPGVKPIGFHKVLEVSDSD 173
LAHIPKLTYLYLDHNQFSGRIP+ FYKH FLKE+YIEGNAFRPGV PIG HKVLE+SD+D
Sbjct: 266 LAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKELYIEGNAFRPGVNPIGAHKVLELSDAD 325
Query: 172 FLV 164
FLV
Sbjct: 326 FLV 328
Score = 61.2 bits (147), Expect = 7e-09
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Frame = -3
Query: 505 IRIEGCFPA-------LRNLYLNNNYFTGGMPAQLANLSSLEILYLSYNKMSGVIPSSLA 347
+ I G FP L L L+NN TG +P Q+ L L +L L +NK+ V+P +
Sbjct: 85 VSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLRRLRMLNLRWNKLQDVLPPEIC 144
Query: 346 HIPKLTYLYLDHNQFSGRIPEPFYKHSFLKEMYIEGNAF 230
+ +LT+L L N F G IP L+ +Y++ N F
Sbjct: 145 ELKRLTHLSLSFNNFKGEIPRELANLPELRYLYLQENRF 183
Score = 56.6 bits (135), Expect = 2e-07
Identities = 28/64 (43%), Positives = 38/64 (58%)
Frame = -3
Query: 478 LRNLYLNNNYFTGGMPAQLANLSSLEILYLSYNKMSGVIPSSLAHIPKLTYLYLDHNQFS 299
LR L L N +P ++ L L L LS+N G IP LA++P+L YLYL N+F+
Sbjct: 125 LRMLNLRWNKLQDVLPPEICELKRLTHLSLSFNNFKGEIPRELANLPELRYLYLQENRFT 184
Query: 298 GRIP 287
GR+P
Sbjct: 185 GRVP 188
>dbj|BAB08479.1| leucine-rich repeat disease resistance protein-like [Arabidopsis
thaliana] gi|22135942|gb|AAM91553.1| Cf-5 disease
resistance protein-like [Arabidopsis thaliana]
gi|23197592|gb|AAN15323.1| Cf-5 disease resistance
protein-like [Arabidopsis thaliana]
Length = 326
Score = 204 bits (519), Expect = 5e-52
Identities = 96/123 (78%), Positives = 109/123 (88%)
Frame = -3
Query: 532 HLVGTIRELIRIEGCFPALRNLYLNNNYFTGGMPAQLANLSSLEILYLSYNKMSGVIPSS 353
HLVGTIRELIR +G FPALRNLYLNNNY +GG+PAQL+NL++LEI+YLSYNK G IP +
Sbjct: 204 HLVGTIRELIRFDGSFPALRNLYLNNNYLSGGIPAQLSNLTNLEIVYLSYNKFIGNIPFA 263
Query: 352 LAHIPKLTYLYLDHNQFSGRIPEPFYKHSFLKEMYIEGNAFRPGVKPIGFHKVLEVSDSD 173
+AHIPKLTYLYLDHNQF+GRIP+ FYKH FLKEMYIEGN F+ GV PIG HKVLEVSD+D
Sbjct: 264 IAHIPKLTYLYLDHNQFTGRIPDAFYKHPFLKEMYIEGNMFKSGVNPIGTHKVLEVSDAD 323
Query: 172 FLV 164
F V
Sbjct: 324 FAV 326
Score = 65.1 bits (157), Expect = 5e-10
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Frame = -3
Query: 505 IRIEGCFPA-------LRNLYLNNNYFTGGMPAQLANLSSLEILYLSYNKMSGVIPSSLA 347
+ I G FP L L L+NN TG +P Q+ L L++L L +NK+ VIP +
Sbjct: 83 VSIVGPFPIAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLKVLNLRWNKLQDVIPPEIG 142
Query: 346 HIPKLTYLYLDHNQFSGRIPEPFYKHSFLKEMYIEGN 236
+ +LT+LYL N F G IP+ L+ +Y++ N
Sbjct: 143 ELKRLTHLYLSFNSFKGEIPKELAALPELRYLYLQEN 179
Score = 54.7 bits (130), Expect = 7e-07
Identities = 29/69 (42%), Positives = 37/69 (53%)
Frame = -3
Query: 493 GCFPALRNLYLNNNYFTGGMPAQLANLSSLEILYLSYNKMSGVIPSSLAHIPKLTYLYLD 314
G L+ L L N +P ++ L L LYLS+N G IP LA +P+L YLYL
Sbjct: 118 GRLKRLKVLNLRWNKLQDVIPPEIGELKRLTHLYLSFNSFKGEIPKELAALPELRYLYLQ 177
Query: 313 HNQFSGRIP 287
N+ GRIP
Sbjct: 178 ENRLIGRIP 186
>ref|NP_200932.1| Cf-5 disease resistance protein - like; protein id: At5g61240.1
[Arabidopsis thaliana]
Length = 380
Score = 204 bits (519), Expect = 5e-52
Identities = 96/123 (78%), Positives = 109/123 (88%)
Frame = -3
Query: 532 HLVGTIRELIRIEGCFPALRNLYLNNNYFTGGMPAQLANLSSLEILYLSYNKMSGVIPSS 353
HLVGTIRELIR +G FPALRNLYLNNNY +GG+PAQL+NL++LEI+YLSYNK G IP +
Sbjct: 258 HLVGTIRELIRFDGSFPALRNLYLNNNYLSGGIPAQLSNLTNLEIVYLSYNKFIGNIPFA 317
Query: 352 LAHIPKLTYLYLDHNQFSGRIPEPFYKHSFLKEMYIEGNAFRPGVKPIGFHKVLEVSDSD 173
+AHIPKLTYLYLDHNQF+GRIP+ FYKH FLKEMYIEGN F+ GV PIG HKVLEVSD+D
Sbjct: 318 IAHIPKLTYLYLDHNQFTGRIPDAFYKHPFLKEMYIEGNMFKSGVNPIGTHKVLEVSDAD 377
Query: 172 FLV 164
F V
Sbjct: 378 FAV 380
Score = 52.8 bits (125), Expect = 3e-06
Identities = 24/50 (48%), Positives = 31/50 (62%)
Frame = -3
Query: 436 MPAQLANLSSLEILYLSYNKMSGVIPSSLAHIPKLTYLYLDHNQFSGRIP 287
+P ++ L L LYLS+N G IP LA +P+L YLYL N+ GRIP
Sbjct: 191 IPPEIGELKRLTHLYLSFNSFKGEIPKELAALPELRYLYLQENRLIGRIP 240
Score = 46.6 bits (109), Expect = 2e-04
Identities = 24/72 (33%), Positives = 39/72 (53%), Gaps = 11/72 (15%)
Frame = -3
Query: 418 NLSSLEILYLS-----------YNKMSGVIPSSLAHIPKLTYLYLDHNQFSGRIPEPFYK 272
N+SS +IL+L+ +NK+ VIP + + +LT+LYL N F G IP+
Sbjct: 162 NMSSFQILHLNIYSVVITRNLRWNKLQDVIPPEIGELKRLTHLYLSFNSFKGEIPKELAA 221
Query: 271 HSFLKEMYIEGN 236
L+ +Y++ N
Sbjct: 222 LPELRYLYLQEN 233
>ref|NP_172844.1| disease resistance protein, putative; protein id: At1g13910.1
[Arabidopsis thaliana] gi|26450219|dbj|BAC42228.1|
putative disease resistance protein [Arabidopsis
thaliana]
Length = 330
Score = 185 bits (470), Expect = 3e-46
Identities = 88/123 (71%), Positives = 107/123 (86%)
Frame = -3
Query: 532 HLVGTIRELIRIEGCFPALRNLYLNNNYFTGGMPAQLANLSSLEILYLSYNKMSGVIPSS 353
+LVG+I +L RIEGCFPALRNL+LNNNY TGG+P +LANL++LEILYLS+NKM+G IP++
Sbjct: 208 NLVGSISDLFRIEGCFPALRNLFLNNNYLTGGLPNKLANLTNLEILYLSFNKMTGAIPAA 267
Query: 352 LAHIPKLTYLYLDHNQFSGRIPEPFYKHSFLKEMYIEGNAFRPGVKPIGFHKVLEVSDSD 173
LA IP+LT L+LDHN F+G IPE FYKH LK+MYIEGNAF+ VK IG HKVLE+SD+D
Sbjct: 268 LASIPRLTNLHLDHNLFNGSIPEAFYKHPNLKDMYIEGNAFKSDVKAIGAHKVLELSDTD 327
Query: 172 FLV 164
FLV
Sbjct: 328 FLV 330
Score = 57.8 bits (138), Expect = 8e-08
Identities = 36/113 (31%), Positives = 55/113 (47%), Gaps = 14/113 (12%)
Frame = -3
Query: 526 VGTIRELIRIE-------GCFPA-------LRNLYLNNNYFTGGMPAQLANLSSLEILYL 389
VG R ++++E G FP L L ++NN TG +P ++ L L L L
Sbjct: 73 VGDYRVVVKLEVYSMSIVGNFPKAITKLLDLTVLDMHNNKLTGPIPPEIGRLKRLITLNL 132
Query: 388 SYNKMSGVIPSSLAHIPKLTYLYLDHNQFSGRIPEPFYKHSFLKEMYIEGNAF 230
+NK+ +P + + LTYLYL N F G IP+ L+ ++I+ N F
Sbjct: 133 RWNKLQQALPPEIGGLKSLTYLYLSFNNFKGEIPKELANLHELQYLHIQENHF 185
Score = 55.8 bits (133), Expect = 3e-07
Identities = 28/69 (40%), Positives = 38/69 (54%)
Frame = -3
Query: 493 GCFPALRNLYLNNNYFTGGMPAQLANLSSLEILYLSYNKMSGVIPSSLAHIPKLTYLYLD 314
G L L L N +P ++ L SL LYLS+N G IP LA++ +L YL++
Sbjct: 122 GRLKRLITLNLRWNKLQQALPPEIGGLKSLTYLYLSFNNFKGEIPKELANLHELQYLHIQ 181
Query: 313 HNQFSGRIP 287
N F+GRIP
Sbjct: 182 ENHFTGRIP 190
Score = 52.0 bits (123), Expect = 4e-06
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Frame = -3
Query: 493 GCFPALRNLYLNNNYFTGGMPAQLANLSSLEILYLSYNKMSGVIPSSLAHIPKLTYLYLD 314
G +L LYL+ N F G +P +LANL L+ L++ N +G IP+ L + KL +L
Sbjct: 146 GGLKSLTYLYLSFNNFKGEIPKELANLHELQYLHIQENHFTGRIPAELGTLQKLRHLDAG 205
Query: 313 HNQFSGRIPE--------PFYKHSFLKEMYIEG 239
+N G I + P ++ FL Y+ G
Sbjct: 206 NNNLVGSISDLFRIEGCFPALRNLFLNNNYLTG 238
>pir||B86272 protein F16A14.12 [imported] - Arabidopsis thaliana
gi|8778389|gb|AAF79397.1|AC068197_7 F16A14.12
[Arabidopsis thaliana]
Length = 383
Score = 185 bits (470), Expect = 3e-46
Identities = 88/123 (71%), Positives = 107/123 (86%)
Frame = -3
Query: 532 HLVGTIRELIRIEGCFPALRNLYLNNNYFTGGMPAQLANLSSLEILYLSYNKMSGVIPSS 353
+LVG+I +L RIEGCFPALRNL+LNNNY TGG+P +LANL++LEILYLS+NKM+G IP++
Sbjct: 261 NLVGSISDLFRIEGCFPALRNLFLNNNYLTGGLPNKLANLTNLEILYLSFNKMTGAIPAA 320
Query: 352 LAHIPKLTYLYLDHNQFSGRIPEPFYKHSFLKEMYIEGNAFRPGVKPIGFHKVLEVSDSD 173
LA IP+LT L+LDHN F+G IPE FYKH LK+MYIEGNAF+ VK IG HKVLE+SD+D
Sbjct: 321 LASIPRLTNLHLDHNLFNGSIPEAFYKHPNLKDMYIEGNAFKSDVKAIGAHKVLELSDTD 380
Query: 172 FLV 164
FLV
Sbjct: 381 FLV 383
Score = 57.8 bits (138), Expect = 8e-08
Identities = 36/113 (31%), Positives = 55/113 (47%), Gaps = 14/113 (12%)
Frame = -3
Query: 526 VGTIRELIRIE-------GCFPA-------LRNLYLNNNYFTGGMPAQLANLSSLEILYL 389
VG R ++++E G FP L L ++NN TG +P ++ L L L L
Sbjct: 126 VGDYRVVVKLEVYSMSIVGNFPKAITKLLDLTVLDMHNNKLTGPIPPEIGRLKRLITLNL 185
Query: 388 SYNKMSGVIPSSLAHIPKLTYLYLDHNQFSGRIPEPFYKHSFLKEMYIEGNAF 230
+NK+ +P + + LTYLYL N F G IP+ L+ ++I+ N F
Sbjct: 186 RWNKLQQALPPEIGGLKSLTYLYLSFNNFKGEIPKELANLHELQYLHIQENHF 238
Score = 55.8 bits (133), Expect = 3e-07
Identities = 28/69 (40%), Positives = 38/69 (54%)
Frame = -3
Query: 493 GCFPALRNLYLNNNYFTGGMPAQLANLSSLEILYLSYNKMSGVIPSSLAHIPKLTYLYLD 314
G L L L N +P ++ L SL LYLS+N G IP LA++ +L YL++
Sbjct: 175 GRLKRLITLNLRWNKLQQALPPEIGGLKSLTYLYLSFNNFKGEIPKELANLHELQYLHIQ 234
Query: 313 HNQFSGRIP 287
N F+GRIP
Sbjct: 235 ENHFTGRIP 243
Score = 52.0 bits (123), Expect = 4e-06
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Frame = -3
Query: 493 GCFPALRNLYLNNNYFTGGMPAQLANLSSLEILYLSYNKMSGVIPSSLAHIPKLTYLYLD 314
G +L LYL+ N F G +P +LANL L+ L++ N +G IP+ L + KL +L
Sbjct: 199 GGLKSLTYLYLSFNNFKGEIPKELANLHELQYLHIQENHFTGRIPAELGTLQKLRHLDAG 258
Query: 313 HNQFSGRIPE--------PFYKHSFLKEMYIEG 239
+N G I + P ++ FL Y+ G
Sbjct: 259 NNNLVGSISDLFRIEGCFPALRNLFLNNNYLTG 291
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,695,217
Number of Sequences: 1393205
Number of extensions: 9248888
Number of successful extensions: 29485
Number of sequences better than 10.0: 1727
Number of HSP's better than 10.0 without gapping: 20815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27783
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
