Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004755A_C01 KMC004755A_c01
(594 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564560.1| ATP-dependent Clp protease proteolytic subunit ... 39 0.065
gb|AAK43571.1| envelope protein [lumpy skin disease virus] 33 3.6
>ref|NP_564560.1| ATP-dependent Clp protease proteolytic subunit (ClpR1); protein id:
At1g49970.1, supported by cDNA: 29389., supported by
cDNA: gi_15010751, supported by cDNA: gi_5360594
[Arabidopsis thaliana] gi|25453549|pir||T52451
endopeptidase Clp chain P extended inactive homolog
clpP5 [similarity] - Arabidopsis thaliana
gi|5360595|dbj|BAA82069.1| nClpP5 [Arabidopsis thaliana]
gi|8569101|gb|AAF76446.1|AC015445_13 Identical to nClpP5
from Arabidopsis thaliana gb|AB022330 and contains
prenyltransferase PF|00432 and CLP protease PF|00574
domains. ESTs gb|H76908, gb|AA605567, gb|T21932,
gb|T22976 come from this gene gi|15010752|gb|AAK74035.1|
At1g49970/F2J10_5 [Arabidopsis thaliana]
gi|23308343|gb|AAN18141.1| At1g49970/F2J10_5
[Arabidopsis thaliana]
Length = 387
Score = 38.5 bits (88), Expect = 0.065
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = -1
Query: 594 QDAAFEKRNYDEMLAQSRAMRKQAGGNPQAAPSGFR 487
QD++FEKR+YD LAQ RAMR GG AAP+G R
Sbjct: 355 QDSSFEKRDYDGTLAQ-RAMR--PGGGSPAAPAGLR 387
>gb|AAK43571.1| envelope protein [lumpy skin disease virus]
Length = 323
Score = 32.7 bits (73), Expect = 3.6
Identities = 13/40 (32%), Positives = 24/40 (59%)
Frame = -3
Query: 352 FKLTHSIERSSSYLLISRPNGNFIYAVNRGSWGDLLYTYI 233
F+L + S+S +L ++ N NF+Y++ RG + L Y+
Sbjct: 149 FQLRETFHNSNSRILFNQENNNFMYSLTRGGYDFTLSAYV 188
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,748,960
Number of Sequences: 1393205
Number of extensions: 10622342
Number of successful extensions: 19330
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19329
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
