Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004751A_C01 KMC004751A_c01
(273 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07154 bZIP DNA-binding protein HBF-1 - soybean gi|1905785|... 53 1e-06
gb|AAL27150.1| bZIP transcription factor [Nicotiana tabacum] 53 1e-06
pir||S16321 light-induced protein CPRF-2 - parsley 49 2e-05
sp|Q99090|CPR2_PETCR Light-inducible protein CPRF-2 gi|1806261|e... 49 2e-05
pir||JQ2148 OHP2 protein - maize gi|168428|gb|AAA33439.1| opaque... 42 0.002
>pir||T07154 bZIP DNA-binding protein HBF-1 - soybean gi|1905785|emb|CAA71687.1|
G/HBF-1 [Glycine max]
Length = 378
Score = 52.8 bits (125), Expect = 1e-06
Identities = 26/40 (65%), Positives = 29/40 (72%)
Frame = -3
Query: 268 VSGNKMGRTSSLPRVASLEHLQKRIRSGTDSRGPLNNGDQ 149
V GNKMGRT+S+ RVASLEHLQKRIR S G G+Q
Sbjct: 339 VGGNKMGRTTSMQRVASLEHLQKRIRGEVSSCGTQGRGEQ 378
>gb|AAL27150.1| bZIP transcription factor [Nicotiana tabacum]
Length = 450
Score = 52.8 bits (125), Expect = 1e-06
Identities = 26/40 (65%), Positives = 29/40 (72%)
Frame = -3
Query: 268 VSGNKMGRTSSLPRVASLEHLQKRIRSGTDSRGPLNNGDQ 149
V GNKMGRT+S+ RVASLEHLQKRIR S G G+Q
Sbjct: 411 VGGNKMGRTTSMQRVASLEHLQKRIRGEVSSCGTQGRGEQ 450
>pir||S16321 light-induced protein CPRF-2 - parsley
Length = 393
Score = 48.9 bits (115), Expect = 2e-05
Identities = 24/31 (77%), Positives = 25/31 (80%)
Frame = -3
Query: 268 VSGNKMGRTSSLPRVASLEHLQKRIRSGTDS 176
V GNKM RTSS+ RVASLEHLQKRIR G S
Sbjct: 354 VEGNKMERTSSMQRVASLEHLQKRIRGGVSS 384
>sp|Q99090|CPR2_PETCR Light-inducible protein CPRF-2 gi|1806261|emb|CAA41453.1|
DNA-binding protein; bZIP type [Petroselinum crispum]
Length = 401
Score = 48.9 bits (115), Expect = 2e-05
Identities = 24/31 (77%), Positives = 25/31 (80%)
Frame = -3
Query: 268 VSGNKMGRTSSLPRVASLEHLQKRIRSGTDS 176
V GNKM RTSS+ RVASLEHLQKRIR G S
Sbjct: 362 VEGNKMERTSSMQRVASLEHLQKRIRGGVSS 392
>pir||JQ2148 OHP2 protein - maize gi|168428|gb|AAA33439.1| opaque2
heterodimerizing protein 2 [Zea mays]
Length = 410
Score = 42.0 bits (97), Expect = 0.002
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = -3
Query: 265 SGNKMGRTSSLPRVASLEHLQKRIRSGTDSRG 170
+ KMGRT SL RVASLEHLQKR+ G S G
Sbjct: 376 AAGKMGRTDSLQRVASLEHLQKRMCGGPASSG 407
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,423,219
Number of Sequences: 1393205
Number of extensions: 4066623
Number of successful extensions: 8863
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8862
length of database: 448,689,247
effective HSP length: 66
effective length of database: 356,737,717
effective search space used: 8561705208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
