Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004749A_C01 KMC004749A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_196368.1| hypothetical protein XP_196368 [Mus musculus] 35 0.46
ref|ZP_00072689.1| hypothetical protein [Trichodesmium erythraeu... 35 0.79
gb|EAA27006.1| hypothetical protein [Neurospora crassa] 32 5.1
emb|CAD21225.1| conserved hypothetical protein [Neurospora crassa] 32 5.1
>ref|XP_196368.1| hypothetical protein XP_196368 [Mus musculus]
Length = 100
Score = 35.4 bits (80), Expect = 0.46
Identities = 17/39 (43%), Positives = 20/39 (50%)
Frame = -3
Query: 450 SWDDGIGCALSHGLALDFIQSLLLVCFYCCSIHFSSPCL 334
SW + S G L QSLLL+ F+ CS SPCL
Sbjct: 52 SWVSAVATVFSIGRCLQLSQSLLLLSFFICSSSCLSPCL 90
>ref|ZP_00072689.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 746
Score = 34.7 bits (78), Expect = 0.79
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 94 YQQKNYSMVVVWYTRSVLLKKVN-HVYRNRGVRRFSQSIYVQSSNVWGRLI 243
Y+ KNY + YT+++LL N + Y NRGV F Q Y ++ N + +++
Sbjct: 391 YELKNYQNAISDYTKAILLNPSNVNAYFNRGVVYFEQQNYPKAINDFTQIL 441
>gb|EAA27006.1| hypothetical protein [Neurospora crassa]
Length = 1032
Score = 32.0 bits (71), Expect = 5.1
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -3
Query: 369 YCCSIHFSSPCLMSENHKLT*PCKTPSSTSTISRPPTLAMCPDQAAPDI**--LHIYTLR 196
YC IH SS E+ + T P P +T+ S T D+A P I L +Y
Sbjct: 908 YCNRIHKSS-----EHPQPTSPSHPPGTTTITSPSSTEDPSQDEAHPSIYHTLLSLYLTP 962
Query: 195 KSPNPPVSVHMIDFLQKH*AGVP 127
SP+ P +D L KH + +P
Sbjct: 963 PSPHKPNLPPALDLLSKHGSRLP 985
>emb|CAD21225.1| conserved hypothetical protein [Neurospora crassa]
Length = 1032
Score = 32.0 bits (71), Expect = 5.1
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = -3
Query: 369 YCCSIHFSSPCLMSENHKLT*PCKTPSSTSTISRPPTLAMCPDQAAPDI**--LHIYTLR 196
YC IH SS E+ + T P P +T+ S T D+A P I L +Y
Sbjct: 908 YCNRIHKSS-----EHPQPTSPSHPPGTTTITSPSSTEDPSQDEAHPSIYHTLLSLYLTP 962
Query: 195 KSPNPPVSVHMIDFLQKH*AGVP 127
SP+ P +D L KH + +P
Sbjct: 963 PSPHKPNLPPALDLLSKHGSRLP 985
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,349,688
Number of Sequences: 1393205
Number of extensions: 10712679
Number of successful extensions: 24141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24123
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
