Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004748A_C01 KMC004748A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79879.1|AC000348_32 T7N9.5 [Arabidopsis thaliana] 54 9e-07
ref|NP_174020.1| polyprotein, putative; protein id: At1g26990.1 ... 54 9e-07
dbj|BAB08717.1| contains similarity to retroelement pol polyprot... 52 1e-06
ref|NP_178878.1| putative retroelement pol polyprotein; protein ... 53 3e-06
ref|NP_192523.1| putative polyprotein; protein id: At4g07810.1 [... 52 4e-06
>gb|AAF79879.1|AC000348_32 T7N9.5 [Arabidopsis thaliana]
Length = 1436
Score = 54.3 bits (129), Expect = 9e-07
Identities = 26/79 (32%), Positives = 42/79 (52%), Gaps = 8/79 (10%)
Frame = -3
Query: 517 RPTCTHCGILGHTKDKCYRLIGFPPHYKKSK--------SVASVNAVTTGTEDSPSANSS 362
+P CTHC +GHT DKCY++ G+PP + ++K ++AS + + T + SA
Sbjct: 268 KPKCTHCNRIGHTVDKCYKVHGYPPGHPRAKENTYVGSTNLASTDQIETQAPPTMSATGH 327
Query: 361 VPFTAQQCQVLLQMLQTQL 305
+ Q L+ L T+L
Sbjct: 328 ETMSNDHIQQLISYLSTKL 346
>ref|NP_174020.1| polyprotein, putative; protein id: At1g26990.1 [Arabidopsis
thaliana]
Length = 1425
Score = 54.3 bits (129), Expect = 9e-07
Identities = 26/79 (32%), Positives = 42/79 (52%), Gaps = 8/79 (10%)
Frame = -3
Query: 517 RPTCTHCGILGHTKDKCYRLIGFPPHYKKSK--------SVASVNAVTTGTEDSPSANSS 362
+P CTHC +GHT DKCY++ G+PP + ++K ++AS + + T + SA
Sbjct: 275 KPKCTHCNRIGHTVDKCYKVHGYPPGHPRAKENTYVGSTNLASTDQIETQAPPTMSATGH 334
Query: 361 VPFTAQQCQVLLQMLQTQL 305
+ Q L+ L T+L
Sbjct: 335 ETMSNDHIQQLISYLSTKL 353
>dbj|BAB08717.1| contains similarity to retroelement pol polyprotein~gene_id:MOK9.20
[Arabidopsis thaliana]
Length = 813
Score = 52.0 bits (123), Expect(2) = 1e-06
Identities = 29/88 (32%), Positives = 44/88 (49%), Gaps = 2/88 (2%)
Frame = -3
Query: 520 DRPTCTHCGILGHTKDKCYRLIGFPPHYKKSKS--VASVNAVTTGTEDSPSANSSVPFTA 347
++P C+HCG +GHT KCY++ G+PP K + VT G + S FT
Sbjct: 99 EKPICSHCGKVGHTVQKCYKVHGYPPDMKIGNQGYTYKMPHVTQGGNNL----SLQDFTP 154
Query: 346 QQCQVLLQMLQTQLSHAQLPDSAPNGSP 263
QQ + ++ Q Q+ + S+ N SP
Sbjct: 155 QQIEQMISQFQAQVQVQEPEASSGNPSP 182
Score = 21.6 bits (44), Expect(2) = 1e-06
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 261 QSKMIGRGDMEQGLYIYKPDSAAQKSAL 178
Q MIGRG + LYI + + + +++
Sbjct: 213 QGLMIGRGKLYHNLYILETGNKSLSTSI 240
>ref|NP_178878.1| putative retroelement pol polyprotein; protein id: At2g11140.1,
supported by cDNA: gi_17065313 [Arabidopsis thaliana]
gi|25411380|pir||H84495 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
gi|4263646|gb|AAD15368.1| putative retroelement pol
polyprotein [Arabidopsis thaliana]
gi|17065314|gb|AAL32811.1| putative retroelement pol
polyprotein [Arabidopsis thaliana]
gi|21387147|gb|AAM47977.1| putative retroelement pol
polyprotein [Arabidopsis thaliana]
Length = 411
Score = 52.8 bits (125), Expect = 3e-06
Identities = 29/88 (32%), Positives = 43/88 (47%), Gaps = 8/88 (9%)
Frame = -3
Query: 517 RPTCTHCGILGHTKDKCYRLIGFPPHYKKSKSVASVNAVTTGTEDSPSANSSVP-----F 353
+P CTHC +GHT DKCY++ G+PP + ++ +S T T S N +
Sbjct: 310 KPKCTHCNRIGHTVDKCYKVHGYPPGHPRANQQSSCVGSTNLTSIDQSENQAPVMQDEIM 369
Query: 352 TAQQCQVLLQMLQTQLSHAQL---PDSA 278
+ Q L+ L T+L A + PD A
Sbjct: 370 SKDHIQQLISYLSTKLQSASITSCPDKA 397
>ref|NP_192523.1| putative polyprotein; protein id: At4g07810.1 [Arabidopsis
thaliana] gi|25301678|pir||C85077 probable polyprotein
[imported] - Arabidopsis thaliana
gi|4325355|gb|AAD17352.1| contains similarity to
retrovirus-related polyproteins [Arabidopsis thaliana]
gi|7267379|emb|CAB77940.1| putative polyprotein
[Arabidopsis thaliana]
Length = 1366
Score = 52.4 bits (124), Expect = 4e-06
Identities = 19/30 (63%), Positives = 24/30 (79%)
Frame = -3
Query: 523 KDRPTCTHCGILGHTKDKCYRLIGFPPHYK 434
K RP CT+CG+LGHT +CY+L G+PP YK
Sbjct: 237 KSRPLCTYCGLLGHTNARCYKLHGYPPGYK 266
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,628,777
Number of Sequences: 1393205
Number of extensions: 10117134
Number of successful extensions: 28678
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 27722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28660
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
