Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004747A_C01 KMC004747A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181288.1| unknown protein; protein id: At2g37520.1 [Arabi... 108 4e-23
ref|NP_180365.1| hypothetical protein; protein id: At2g27980.1 [... 106 2e-22
ref|NP_190936.1| putative protein; protein id: At3g53680.1 [Arab... 104 7e-22
ref|NP_181210.2| putative PHD-type zinc finger protein; protein ... 99 3e-20
pir||H84783 probable PHD-type zinc finger protein [imported] - A... 99 3e-20
>ref|NP_181288.1| unknown protein; protein id: At2g37520.1 [Arabidopsis thaliana]
gi|7485433|pir||T02518 hypothetical protein At2g37520
[imported] - Arabidopsis thaliana
gi|3236235|gb|AAC23623.1| unknown protein [Arabidopsis
thaliana] gi|20197471|gb|AAM15090.1| unknown protein
[Arabidopsis thaliana]
Length = 825
Score = 108 bits (271), Expect = 4e-23
Identities = 54/98 (55%), Positives = 71/98 (72%)
Frame = -3
Query: 567 DIAVLPFLATSNKYRGKGYFPTLFSCIERLLSFLSVKNLVLPAAEEAESIWIHKFGFSKM 388
++A LP +ATS +Y+G+GYF L++C+E LLS L+V+NLVLPAAEEAESIW KFGF+KM
Sbjct: 725 EVAELPIVATSREYQGRGYFQGLYACVENLLSSLNVENLVLPAAEEAESIWTKKFGFTKM 784
Query: 387 EPDQLTNYRKNYCQMMAFKGTVMLHKTVPQCRVTNTQS 274
QL Y+K Q+ FKGT ML K VP+ ++S
Sbjct: 785 SDQQLQEYQKE-VQLTIFKGTSMLEKKVPKATTGLSES 821
>ref|NP_180365.1| hypothetical protein; protein id: At2g27980.1 [Arabidopsis thaliana]
gi|25407937|pir||C84679 hypothetical protein At2g27980
[imported] - Arabidopsis thaliana
gi|4510418|gb|AAD21504.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1008
Score = 106 bits (264), Expect = 2e-22
Identities = 51/89 (57%), Positives = 69/89 (77%)
Frame = -3
Query: 567 DIAVLPFLATSNKYRGKGYFPTLFSCIERLLSFLSVKNLVLPAAEEAESIWIHKFGFSKM 388
++A LP +ATS +G+GYF LF+CIERLL FL+VK++VLPAA+EA+SIW KFGF+KM
Sbjct: 907 ELAELPLVATSKDCQGQGYFQCLFACIERLLGFLNVKHIVLPAADEAKSIWTDKFGFTKM 966
Query: 387 EPDQLTNYRKNYCQMMAFKGTVMLHKTVP 301
+++ YRK+Y +M F GT ML K+VP
Sbjct: 967 TDEEVKEYRKDY-SVMIFHGTSMLRKSVP 994
>ref|NP_190936.1| putative protein; protein id: At3g53680.1 [Arabidopsis thaliana]
gi|11282417|pir||T45908 hypothetical protein F4P12.380 -
Arabidopsis thaliana gi|6729519|emb|CAB67675.1| putative
protein [Arabidopsis thaliana]
Length = 839
Score = 104 bits (260), Expect = 7e-22
Identities = 51/88 (57%), Positives = 67/88 (75%)
Frame = -3
Query: 564 IAVLPFLATSNKYRGKGYFPTLFSCIERLLSFLSVKNLVLPAAEEAESIWIHKFGFSKME 385
+A LP +ATS +Y+G+GYF LF+C+E LLS L+V+NL+LPAAEEAESIW +KFGF+KM
Sbjct: 744 VAELPIVATSREYQGRGYFQGLFACVENLLSSLNVENLLLPAAEEAESIWTNKFGFTKMT 803
Query: 384 PDQLTNYRKNYCQMMAFKGTVMLHKTVP 301
+L Y++ Q+ FKGT ML K VP
Sbjct: 804 EHRLQRYQRE-VQLTIFKGTSMLEKKVP 830
>ref|NP_181210.2| putative PHD-type zinc finger protein; protein id: At2g36720.1,
supported by cDNA: gi_20260433 [Arabidopsis thaliana]
gi|20260434|gb|AAM13115.1| putative PHD-type zinc finger
protein [Arabidopsis thaliana]
Length = 1007
Score = 99.4 bits (246), Expect = 3e-20
Identities = 49/88 (55%), Positives = 65/88 (73%)
Frame = -3
Query: 567 DIAVLPFLATSNKYRGKGYFPTLFSCIERLLSFLSVKNLVLPAAEEAESIWIHKFGFSKM 388
++A LP +AT R KGYF LFSCIE+LLS L+V+++V+PAAEEAE +W++KFGF K+
Sbjct: 886 EVAELPLVATRMCSREKGYFQLLFSCIEKLLSSLNVESIVVPAAEEAEPLWMNKFGFRKL 945
Query: 387 EPDQLTNYRKNYCQMMAFKGTVMLHKTV 304
P+QL+ Y K QM+ FKG ML K V
Sbjct: 946 APEQLSKYIKICYQMVRFKGASMLQKPV 973
>pir||H84783 probable PHD-type zinc finger protein [imported] - Arabidopsis
thaliana gi|4415917|gb|AAD20148.1| putative PHD-type zinc
finger protein [Arabidopsis thaliana]
Length = 958
Score = 99.4 bits (246), Expect = 3e-20
Identities = 49/88 (55%), Positives = 65/88 (73%)
Frame = -3
Query: 567 DIAVLPFLATSNKYRGKGYFPTLFSCIERLLSFLSVKNLVLPAAEEAESIWIHKFGFSKM 388
++A LP +AT R KGYF LFSCIE+LLS L+V+++V+PAAEEAE +W++KFGF K+
Sbjct: 837 EVAELPLVATRMCSREKGYFQLLFSCIEKLLSSLNVESIVVPAAEEAEPLWMNKFGFRKL 896
Query: 387 EPDQLTNYRKNYCQMMAFKGTVMLHKTV 304
P+QL+ Y K QM+ FKG ML K V
Sbjct: 897 APEQLSKYIKICYQMVRFKGASMLQKPV 924
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,802,724
Number of Sequences: 1393205
Number of extensions: 9281723
Number of successful extensions: 18705
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 18380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18701
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
